Peptoniphilus harei ACS-146-V-Sch2b

J. Craig Venter Institute

Released Date: Nov. 29, 2010 #20523

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00048, whole genome shotgun sequence
NZ_AENP01000001
1.0 KB
2 CDS

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contig00021, whole genome shotgun sequence
NZ_AENP01000002
7.4 KB
12 CDS

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contig00007, whole genome shotgun sequence
NZ_AENP01000003
80.9 KB
168 CDS

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contig00027, whole genome shotgun sequence
NZ_AENP01000004
202.4 KB
366 CDS

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contig00017, whole genome shotgun sequence
NZ_AENP01000005
2.5 KB
4 CDS

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contig00002, whole genome shotgun sequence
NZ_AENP01000006
74.7 KB
150 CDS

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contig00001, whole genome shotgun sequence
NZ_AENP01000007
114.4 KB
200 CDS

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contig00018, whole genome shotgun sequence
NZ_AENP01000008
116.7 KB
218 CDS

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contig00040, whole genome shotgun sequence
NZ_AENP01000009
677 bytes
2 CDS

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contig00016, whole genome shotgun sequence
NZ_AENP01000010
1.1 KB
2 CDS

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contig00036, whole genome shotgun sequence
NZ_AENP01000011
3.0 KB
6 CDS

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contig00026, whole genome shotgun sequence
NZ_AENP01000012
135.9 KB
276 CDS

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contig00037, whole genome shotgun sequence
NZ_AENP01000013
3.0 KB
0 CDS

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contig00020, whole genome shotgun sequence
NZ_AENP01000014
24.9 KB
34 CDS

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contig00014, whole genome shotgun sequence
NZ_AENP01000015
111.5 KB
218 CDS

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contig00024, whole genome shotgun sequence
NZ_AENP01000016
8.2 KB
24 CDS

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contig00010, whole genome shotgun sequence
NZ_AENP01000017
1.7 KB
2 CDS

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contig00045, whole genome shotgun sequence
NZ_AENP01000018
76.9 KB
130 CDS

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contig00011, whole genome shotgun sequence
NZ_AENP01000019
108.6 KB
202 CDS

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contig00022, whole genome shotgun sequence
NZ_AENP01000020
47.5 KB
80 CDS

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contig00013, whole genome shotgun sequence
NZ_AENP01000021
111.2 KB
230 CDS

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contig00023, whole genome shotgun sequence
NZ_AENP01000022
55.9 KB
108 CDS

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contig00039, whole genome shotgun sequence
NZ_AENP01000023
2.7 KB
2 CDS

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contig00006, whole genome shotgun sequence
NZ_AENP01000024
22.2 KB
42 CDS

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contig00003, whole genome shotgun sequence
NZ_AENP01000025
95.4 KB
170 CDS

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contig00009, whole genome shotgun sequence
NZ_AENP01000026
104.9 KB
218 CDS

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contig00012, whole genome shotgun sequence
NZ_AENP01000027
80.2 KB
152 CDS

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contig00015, whole genome shotgun sequence
NZ_AENP01000028
31.2 KB
70 CDS

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contig00008, whole genome shotgun sequence
NZ_AENP01000029
7.2 KB
12 CDS

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contig00004, whole genome shotgun sequence
NZ_AENP01000030
71.3 KB
164 CDS

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contig00019, whole genome shotgun sequence
NZ_AENP01000031
6.8 KB
16 CDS

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contig00005, whole genome shotgun sequence
NZ_AENP01000032
81.2 KB
168 CDS

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Taxonomy

External Links

Peptoniphilus harei ACS-146-V-Sch2b

Search Genome

Sequences

PubMed Search for Peptoniphilus harei ACS-146-V-Sch2b

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