Photobacterium profundum 3TCK

J. Craig Venter Institute

Genome Size: 5.8 megabases, GC Content: 41.3%, Released Date: March 23, 2006 #18298

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAPH01000001
770.6 KB
691 CDS

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whole genome shotgun sequence
NZ_AAPH01000002
425.1 KB
393 CDS

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whole genome shotgun sequence
NZ_AAPH01000003
227.4 KB
202 CDS

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whole genome shotgun sequence
NZ_AAPH01000004
199.6 KB
202 CDS

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whole genome shotgun sequence
NZ_AAPH01000005
175.1 KB
154 CDS

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whole genome shotgun sequence
NZ_AAPH01000006
174.0 KB
152 CDS

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whole genome shotgun sequence
NZ_AAPH01000007
173.3 KB
151 CDS

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whole genome shotgun sequence
NZ_AAPH01000008
171.6 KB
161 CDS

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whole genome shotgun sequence
NZ_AAPH01000009
171.1 KB
155 CDS

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whole genome shotgun sequence
NZ_AAPH01000010
154.8 KB
140 CDS

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whole genome shotgun sequence
NZ_AAPH01000011
138.9 KB
132 CDS

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whole genome shotgun sequence
NZ_AAPH01000012
128.9 KB
115 CDS

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whole genome shotgun sequence
NZ_AAPH01000013
116.5 KB
109 CDS

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whole genome shotgun sequence
NZ_AAPH01000014
115.9 KB
113 CDS

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whole genome shotgun sequence
NZ_AAPH01000015
114.7 KB
104 CDS

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whole genome shotgun sequence
NZ_AAPH01000016
110.5 KB
118 CDS

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whole genome shotgun sequence
NZ_AAPH01000017
108.2 KB
107 CDS

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whole genome shotgun sequence
NZ_AAPH01000018
106.5 KB
100 CDS

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whole genome shotgun sequence
NZ_AAPH01000019
94.8 KB
72 CDS

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whole genome shotgun sequence
NZ_AAPH01000020
93.2 KB
86 CDS

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whole genome shotgun sequence
NZ_AAPH01000021
92.2 KB
78 CDS

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whole genome shotgun sequence
NZ_AAPH01000022
87.9 KB
67 CDS

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whole genome shotgun sequence
NZ_AAPH01000023
87.7 KB
65 CDS

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whole genome shotgun sequence
NZ_AAPH01000024
84.1 KB
80 CDS

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whole genome shotgun sequence
NZ_AAPH01000025
83.7 KB
72 CDS

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whole genome shotgun sequence
NZ_AAPH01000026
82.3 KB
73 CDS

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whole genome shotgun sequence
NZ_AAPH01000027
82.0 KB
76 CDS

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whole genome shotgun sequence
NZ_AAPH01000028
79.5 KB
76 CDS

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whole genome shotgun sequence
NZ_AAPH01000029
76.4 KB
70 CDS

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whole genome shotgun sequence
NZ_AAPH01000030
75.6 KB
78 CDS

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whole genome shotgun sequence
NZ_AAPH01000031
71.5 KB
73 CDS

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whole genome shotgun sequence
NZ_AAPH01000032
69.1 KB
46 CDS

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whole genome shotgun sequence
NZ_AAPH01000033
68.4 KB
70 CDS

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whole genome shotgun sequence
NZ_AAPH01000034
60.8 KB
63 CDS

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whole genome shotgun sequence
NZ_AAPH01000035
54.7 KB
56 CDS

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whole genome shotgun sequence
NZ_AAPH01000036
54.4 KB
61 CDS

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whole genome shotgun sequence
NZ_AAPH01000037
53.7 KB
55 CDS

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whole genome shotgun sequence
NZ_AAPH01000038
52.9 KB
44 CDS

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whole genome shotgun sequence
NZ_AAPH01000039
52.1 KB
58 CDS

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whole genome shotgun sequence
NZ_AAPH01000040
50.9 KB
50 CDS

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whole genome shotgun sequence
NZ_AAPH01000041
50.2 KB
56 CDS

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whole genome shotgun sequence
NZ_AAPH01000042
49.6 KB
48 CDS

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whole genome shotgun sequence
NZ_AAPH01000043
49.4 KB
45 CDS

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whole genome shotgun sequence
NZ_AAPH01000044
45.5 KB
51 CDS

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whole genome shotgun sequence
NZ_AAPH01000045
45.5 KB
36 CDS

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whole genome shotgun sequence
NZ_AAPH01000046
45.3 KB
43 CDS

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whole genome shotgun sequence
NZ_AAPH01000047
44.0 KB
44 CDS

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whole genome shotgun sequence
NZ_AAPH01000048
40.6 KB
49 CDS

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whole genome shotgun sequence
NZ_AAPH01000049
37.3 KB
25 CDS

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whole genome shotgun sequence
NZ_AAPH01000050
35.6 KB
32 CDS

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whole genome shotgun sequence
NZ_AAPH01000051
32.4 KB
27 CDS

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whole genome shotgun sequence
NZ_AAPH01000052
30.9 KB
33 CDS

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whole genome shotgun sequence
NZ_AAPH01000053
30.9 KB
27 CDS

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whole genome shotgun sequence
NZ_AAPH01000054
24.7 KB
28 CDS

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whole genome shotgun sequence
NZ_AAPH01000055
23.5 KB
25 CDS

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whole genome shotgun sequence
NZ_AAPH01000056
23.4 KB
33 CDS

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whole genome shotgun sequence
NZ_AAPH01000057
22.0 KB
32 CDS

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whole genome shotgun sequence
NZ_AAPH01000058
18.2 KB
20 CDS

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whole genome shotgun sequence
NZ_AAPH01000059
16.7 KB
15 CDS

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whole genome shotgun sequence
NZ_AAPH01000060
15.9 KB
20 CDS

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whole genome shotgun sequence
NZ_AAPH01000061
13.7 KB
8 CDS

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whole genome shotgun sequence
NZ_AAPH01000062
11.2 KB
18 CDS

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whole genome shotgun sequence
NZ_AAPH01000063
9.7 KB
9 CDS

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whole genome shotgun sequence
NZ_AAPH01000064
8.6 KB
8 CDS

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whole genome shotgun sequence
NZ_AAPH01000065
8.0 KB
6 CDS

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whole genome shotgun sequence
NZ_AAPH01000066
7.1 KB
9 CDS

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whole genome shotgun sequence
NZ_AAPH01000067
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_AAPH01000068
3.0 KB
6 CDS

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whole genome shotgun sequence
NZ_AAPH01000069
2.9 KB
6 CDS

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whole genome shotgun sequence
NZ_AAPH01000070
2.7 KB
5 CDS

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whole genome shotgun sequence
NZ_AAPH01000071
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPH01000072
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_AAPH01000073
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPH01000074
2.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAPH01000075
2.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAPH01000076
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_AAPH01000077
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPH01000078
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_AAPH01000079
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AAPH01000080
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_AAPH01000081
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAPH01000082
1.3 KB
3 CDS

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Taxonomy

External Links

Photobacterium profundum 3TCK

Search Genome

Sequences

PubMed Search for Photobacterium profundum 3TCK

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