Photobacterium sp. SKA34

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 39.6%, Released Date: March 1, 2006 #18299

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAOU01000001
321.5 KB
275 CDS

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whole genome shotgun sequence
NZ_AAOU01000002
266.0 KB
276 CDS

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whole genome shotgun sequence
NZ_AAOU01000003
177.5 KB
144 CDS

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whole genome shotgun sequence
NZ_AAOU01000004
150.7 KB
132 CDS

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whole genome shotgun sequence
NZ_AAOU01000005
145.1 KB
157 CDS

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whole genome shotgun sequence
NZ_AAOU01000006
137.9 KB
136 CDS

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whole genome shotgun sequence
NZ_AAOU01000007
125.0 KB
120 CDS

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whole genome shotgun sequence
NZ_AAOU01000008
124.2 KB
107 CDS

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whole genome shotgun sequence
NZ_AAOU01000009
119.3 KB
100 CDS

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whole genome shotgun sequence
NZ_AAOU01000010
119.2 KB
115 CDS

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whole genome shotgun sequence
NZ_AAOU01000011
114.8 KB
116 CDS

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whole genome shotgun sequence
NZ_AAOU01000012
113.9 KB
122 CDS

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whole genome shotgun sequence
NZ_AAOU01000013
111.1 KB
102 CDS

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whole genome shotgun sequence
NZ_AAOU01000014
109.4 KB
101 CDS

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whole genome shotgun sequence
NZ_AAOU01000015
107.9 KB
77 CDS

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whole genome shotgun sequence
NZ_AAOU01000016
107.5 KB
108 CDS

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whole genome shotgun sequence
NZ_AAOU01000017
103.8 KB
107 CDS

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whole genome shotgun sequence
NZ_AAOU01000018
99.5 KB
95 CDS

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whole genome shotgun sequence
NZ_AAOU01000019
98.0 KB
90 CDS

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whole genome shotgun sequence
NZ_AAOU01000020
91.8 KB
80 CDS

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whole genome shotgun sequence
NZ_AAOU01000021
88.8 KB
78 CDS

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whole genome shotgun sequence
NZ_AAOU01000022
88.7 KB
88 CDS

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whole genome shotgun sequence
NZ_AAOU01000023
87.8 KB
96 CDS

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whole genome shotgun sequence
NZ_AAOU01000024
81.9 KB
77 CDS

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whole genome shotgun sequence
NZ_AAOU01000025
76.5 KB
75 CDS

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whole genome shotgun sequence
NZ_AAOU01000026
76.0 KB
72 CDS

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whole genome shotgun sequence
NZ_AAOU01000027
73.9 KB
55 CDS

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whole genome shotgun sequence
NZ_AAOU01000028
72.3 KB
71 CDS

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whole genome shotgun sequence
NZ_AAOU01000029
70.0 KB
65 CDS

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whole genome shotgun sequence
NZ_AAOU01000030
68.4 KB
61 CDS

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whole genome shotgun sequence
NZ_AAOU01000031
66.3 KB
66 CDS

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whole genome shotgun sequence
NZ_AAOU01000032
66.0 KB
71 CDS

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whole genome shotgun sequence
NZ_AAOU01000033
65.3 KB
54 CDS

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whole genome shotgun sequence
NZ_AAOU01000034
64.9 KB
74 CDS

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whole genome shotgun sequence
NZ_AAOU01000035
60.5 KB
63 CDS

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whole genome shotgun sequence
NZ_AAOU01000036
57.2 KB
60 CDS

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whole genome shotgun sequence
NZ_AAOU01000037
52.7 KB
46 CDS

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whole genome shotgun sequence
NZ_AAOU01000038
52.5 KB
40 CDS

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whole genome shotgun sequence
NZ_AAOU01000039
51.1 KB
43 CDS

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whole genome shotgun sequence
NZ_AAOU01000040
42.9 KB
45 CDS

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whole genome shotgun sequence
NZ_AAOU01000041
42.5 KB
9 CDS

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whole genome shotgun sequence
NZ_AAOU01000042
41.4 KB
40 CDS

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whole genome shotgun sequence
NZ_AAOU01000043
39.3 KB
39 CDS

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whole genome shotgun sequence
NZ_AAOU01000044
34.7 KB
35 CDS

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whole genome shotgun sequence
NZ_AAOU01000045
33.1 KB
29 CDS

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whole genome shotgun sequence
NZ_AAOU01000046
30.4 KB
29 CDS

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whole genome shotgun sequence
NZ_AAOU01000047
28.0 KB
30 CDS

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whole genome shotgun sequence
NZ_AAOU01000048
27.2 KB
21 CDS

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whole genome shotgun sequence
NZ_AAOU01000049
27.0 KB
29 CDS

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whole genome shotgun sequence
NZ_AAOU01000050
27.0 KB
37 CDS

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whole genome shotgun sequence
NZ_AAOU01000051
24.1 KB
30 CDS

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whole genome shotgun sequence
NZ_AAOU01000052
23.0 KB
26 CDS

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whole genome shotgun sequence
NZ_AAOU01000053
23.0 KB
24 CDS

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whole genome shotgun sequence
NZ_AAOU01000054
22.9 KB
19 CDS

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whole genome shotgun sequence
NZ_AAOU01000055
22.9 KB
25 CDS

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whole genome shotgun sequence
NZ_AAOU01000056
20.3 KB
25 CDS

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whole genome shotgun sequence
NZ_AAOU01000057
20.3 KB
17 CDS

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whole genome shotgun sequence
NZ_AAOU01000058
20.0 KB
21 CDS

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whole genome shotgun sequence
NZ_AAOU01000059
19.9 KB
19 CDS

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whole genome shotgun sequence
NZ_AAOU01000060
19.1 KB
20 CDS

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whole genome shotgun sequence
NZ_AAOU01000061
16.8 KB
18 CDS

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whole genome shotgun sequence
NZ_AAOU01000062
15.9 KB
16 CDS

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whole genome shotgun sequence
NZ_AAOU01000063
14.4 KB
14 CDS

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whole genome shotgun sequence
NZ_AAOU01000064
14.3 KB
14 CDS

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whole genome shotgun sequence
NZ_AAOU01000065
12.2 KB
17 CDS

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whole genome shotgun sequence
NZ_AAOU01000066
11.9 KB
11 CDS

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whole genome shotgun sequence
NZ_AAOU01000067
11.3 KB
15 CDS

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whole genome shotgun sequence
NZ_AAOU01000068
10.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOU01000069
9.5 KB
8 CDS

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whole genome shotgun sequence
NZ_AAOU01000070
9.2 KB
11 CDS

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whole genome shotgun sequence
NZ_AAOU01000071
8.2 KB
9 CDS

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whole genome shotgun sequence
NZ_AAOU01000072
7.5 KB
7 CDS

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whole genome shotgun sequence
NZ_AAOU01000073
7.0 KB
6 CDS

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whole genome shotgun sequence
NZ_AAOU01000074
2.8 KB
4 CDS

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whole genome shotgun sequence
NZ_AAOU01000075
2.5 KB
5 CDS

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whole genome shotgun sequence
NZ_AAOU01000076
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOU01000077
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOU01000078
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOU01000079
2.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOU01000080
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOU01000081
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOU01000082
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOU01000083
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOU01000084
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOU01000085
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOU01000086
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOU01000087
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOU01000088
1.2 KB
2 CDS

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Taxonomy

External Links

Photobacterium sp. SKA34

Search Genome

Sequences

PubMed Search for Photobacterium sp. SKA34

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