Polaribacter irgensii 23-P

J. Craig Venter Institute

GC Content: 34.5%, Released Date: Feb. 24, 2006 #18303

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAOG01000001
961.7 KB
914 CDS

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whole genome shotgun sequence
NZ_AAOG01000002
905.9 KB
884 CDS

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whole genome shotgun sequence
NZ_AAOG01000003
432.2 KB
406 CDS

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whole genome shotgun sequence
NZ_AAOG01000004
169.6 KB
146 CDS

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whole genome shotgun sequence
NZ_AAOG01000005
130.1 KB
131 CDS

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whole genome shotgun sequence
NZ_AAOG01000006
71.5 KB
72 CDS

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whole genome shotgun sequence
NZ_AAOG01000007
10.0 KB
4 CDS

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Taxonomy

External Links

Polaribacter irgensii 23-P

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Sequences

PubMed Search for Polaribacter irgensii 23-P

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