Polaribacter sp. MED152

J. Craig Venter Institute

Genome Size: 3.0 megabases, GC Content: 30.6%, Released Date: Jan. 27, 2006 #15104

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Sequences

unfinished sequence, whole genome shotgun sequence
NZ_AANA01000001
2.3 MB
0 CDS

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unfinished sequence, whole genome shotgun sequence
NZ_AANA01000002
491.7 KB
0 CDS

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References

Light stimulates growth of proteorhodopsin-containing marine Flavobacteria
Gomez-Consarnau,L., Gonzalez,J.M., Coll-Llado,M., Gourdon,P., Pascher,T., Neutze,R., Pedros-Alio,C. and Pinhassi,J. Nature 445 (7124), 210-213 (2007)
PubMed, PubGet, HubMed
Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)
Gonzalez,J.M., Fernandez-Gomez,B., Fernandez-Guerra,A., Gomez-Consarnau,L., Sanchez,O., Coll-Llado,M., Del Campo,J., Escudero,L., Rodriguez-Martinez,R., Alonso-Saez,L., Latasa,M., Paulsen,I., Nedashkovskaya,O., Lekunberri,I., Pinhassi,J. and Pedros-Alio,C. Proc. Natl. Acad. Sci. U.S.A. 105 (25), 8724-8729 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Polaribacter sp. MED152

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Sequences

References

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