Porphyromonas endodontalis ATCC 35406

J. Craig Venter Institute

Genome Size: 2.3 megabases, GC Content: 47.5%, Released Date: May 1, 2009 #18304

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACNN01000001
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNN01000002
10.7 KB
14 CDS

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whole genome shotgun sequence
NZ_ACNN01000003
555 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNN01000004
9.4 KB
9 CDS

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whole genome shotgun sequence
NZ_ACNN01000005
285.3 KB
286 CDS

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whole genome shotgun sequence
NZ_ACNN01000006
6.5 KB
13 CDS

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whole genome shotgun sequence
NZ_ACNN01000007
139.2 KB
144 CDS

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whole genome shotgun sequence
NZ_ACNN01000008
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNN01000009
4.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACNN01000010
724 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACNN01000011
49.8 KB
45 CDS

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whole genome shotgun sequence
NZ_ACNN01000012
157.0 KB
149 CDS

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whole genome shotgun sequence
NZ_ACNN01000013
825 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNN01000014
117.9 KB
106 CDS

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whole genome shotgun sequence
NZ_ACNN01000015
500 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACNN01000016
113.8 KB
111 CDS

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whole genome shotgun sequence
NZ_ACNN01000017
16.7 KB
15 CDS

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whole genome shotgun sequence
NZ_ACNN01000018
61.0 KB
51 CDS

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whole genome shotgun sequence
NZ_ACNN01000019
10.5 KB
12 CDS

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whole genome shotgun sequence
NZ_ACNN01000020
225.7 KB
239 CDS

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whole genome shotgun sequence
NZ_ACNN01000021
5.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNN01000022
695 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACNN01000023
15.5 KB
14 CDS

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whole genome shotgun sequence
NZ_ACNN01000024
63.1 KB
75 CDS

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whole genome shotgun sequence
NZ_ACNN01000025
14.0 KB
11 CDS

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whole genome shotgun sequence
NZ_ACNN01000026
257.6 KB
230 CDS

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whole genome shotgun sequence
NZ_ACNN01000027
555 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNN01000028
13.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ACNN01000029
91.5 KB
87 CDS

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whole genome shotgun sequence
NZ_ACNN01000030
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNN01000031
44.2 KB
40 CDS

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whole genome shotgun sequence
NZ_ACNN01000032
56.2 KB
51 CDS

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whole genome shotgun sequence
NZ_ACNN01000033
17.4 KB
18 CDS

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whole genome shotgun sequence
NZ_ACNN01000034
11.1 KB
12 CDS

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whole genome shotgun sequence
NZ_ACNN01000035
101.0 KB
99 CDS

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whole genome shotgun sequence
NZ_ACNN01000036
80.5 KB
76 CDS

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whole genome shotgun sequence
NZ_ACNN01000037
29.1 KB
30 CDS

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Taxonomy

External Links

Porphyromonas endodontalis ATCC 35406

Search Genome

Sequences

PubMed Search for Porphyromonas endodontalis ATCC 35406

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