Prevotella amnii CRIS 21A-A

J. Craig Venter Institute

Genome Size: 2.4 megabases, Released Date: Sept. 21, 2010 #20533

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00055, whole genome shotgun sequence
NZ_ADFQ01000001
3.5 KB
3 CDS

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contig00054, whole genome shotgun sequence
NZ_ADFQ01000002
1.0 KB
0 CDS

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contig00142, whole genome shotgun sequence
NZ_ADFQ01000003
173.8 KB
156 CDS

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contig00092, whole genome shotgun sequence
NZ_ADFQ01000004
60.1 KB
44 CDS

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contig00028, whole genome shotgun sequence
NZ_ADFQ01000005
3.1 KB
4 CDS

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contig00108, whole genome shotgun sequence
NZ_ADFQ01000006
849 bytes
2 CDS

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contig00158, whole genome shotgun sequence
NZ_ADFQ01000007
13.8 KB
11 CDS

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contig00008, whole genome shotgun sequence
NZ_ADFQ01000008
3.6 KB
2 CDS

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contig00124, whole genome shotgun sequence
NZ_ADFQ01000009
881 bytes
2 CDS

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contig00034, whole genome shotgun sequence
NZ_ADFQ01000010
16.1 KB
15 CDS

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contig00155, whole genome shotgun sequence
NZ_ADFQ01000011
11.0 KB
4 CDS

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contig00023, whole genome shotgun sequence
NZ_ADFQ01000012
2.7 KB
2 CDS

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contig00109, whole genome shotgun sequence
NZ_ADFQ01000013
1.2 KB
1 CDS

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contig00021, whole genome shotgun sequence
NZ_ADFQ01000014
86.4 KB
80 CDS

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contig00068, whole genome shotgun sequence
NZ_ADFQ01000015
1022 bytes
1 CDS

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contig00080, whole genome shotgun sequence
NZ_ADFQ01000016
147.9 KB
120 CDS

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contig00131, whole genome shotgun sequence
NZ_ADFQ01000017
16.7 KB
10 CDS

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contig00113, whole genome shotgun sequence
NZ_ADFQ01000018
500 bytes
0 CDS

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contig00035, whole genome shotgun sequence
NZ_ADFQ01000019
49.0 KB
40 CDS

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contig00148, whole genome shotgun sequence
NZ_ADFQ01000020
1.2 KB
1 CDS

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contig00084, whole genome shotgun sequence
NZ_ADFQ01000021
1.8 KB
4 CDS

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contig00090, whole genome shotgun sequence
NZ_ADFQ01000022
2.8 KB
1 CDS

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contig00165, whole genome shotgun sequence
NZ_ADFQ01000023
2.6 KB
3 CDS

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contig00175, whole genome shotgun sequence
NZ_ADFQ01000024
32.2 KB
28 CDS

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contig00026, whole genome shotgun sequence
NZ_ADFQ01000025
5.8 KB
5 CDS

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contig00167, whole genome shotgun sequence
NZ_ADFQ01000026
574 bytes
1 CDS

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contig00144, whole genome shotgun sequence
NZ_ADFQ01000027
97.0 KB
81 CDS

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contig00160, whole genome shotgun sequence
NZ_ADFQ01000028
664 bytes
1 CDS

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contig00141, whole genome shotgun sequence
NZ_ADFQ01000029
718 bytes
1 CDS

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contig00012, whole genome shotgun sequence
NZ_ADFQ01000030
1004 bytes
1 CDS

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contig00039, whole genome shotgun sequence
NZ_ADFQ01000031
61.0 KB
49 CDS

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contig00173, whole genome shotgun sequence
NZ_ADFQ01000032
6.0 KB
7 CDS

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contig00058, whole genome shotgun sequence
NZ_ADFQ01000033
934 bytes
1 CDS

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contig00014, whole genome shotgun sequence
NZ_ADFQ01000034
14.2 KB
12 CDS

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contig00143, whole genome shotgun sequence
NZ_ADFQ01000035
1.2 KB
2 CDS

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contig00122, whole genome shotgun sequence
NZ_ADFQ01000036
20.9 KB
35 CDS

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contig00164, whole genome shotgun sequence
NZ_ADFQ01000037
704 bytes
1 CDS

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contig00072, whole genome shotgun sequence
NZ_ADFQ01000038
2.2 KB
4 CDS

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contig00136, whole genome shotgun sequence
NZ_ADFQ01000039
4.4 KB
8 CDS

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contig00146, whole genome shotgun sequence
NZ_ADFQ01000040
2.9 KB
4 CDS

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contig00118, whole genome shotgun sequence
NZ_ADFQ01000041
7.4 KB
8 CDS

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contig00163, whole genome shotgun sequence
NZ_ADFQ01000042
2.8 KB
4 CDS

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contig00098, whole genome shotgun sequence
NZ_ADFQ01000043
736 bytes
1 CDS

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contig00037, whole genome shotgun sequence
NZ_ADFQ01000044
27.9 KB
26 CDS

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contig00075, whole genome shotgun sequence
NZ_ADFQ01000045
1.0 KB
1 CDS

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contig00062, whole genome shotgun sequence
NZ_ADFQ01000046
1.9 KB
1 CDS

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contig00097, whole genome shotgun sequence
NZ_ADFQ01000047
1.7 KB
2 CDS

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contig00151, whole genome shotgun sequence
NZ_ADFQ01000048
776 bytes
1 CDS

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contig00174, whole genome shotgun sequence
NZ_ADFQ01000049
9.3 KB
8 CDS

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contig00085, whole genome shotgun sequence
NZ_ADFQ01000050
21.4 KB
17 CDS

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contig00064, whole genome shotgun sequence
NZ_ADFQ01000051
154.1 KB
125 CDS

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contig00015, whole genome shotgun sequence
NZ_ADFQ01000052
2.8 KB
2 CDS

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contig00020, whole genome shotgun sequence
NZ_ADFQ01000053
5.2 KB
4 CDS

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contig00125, whole genome shotgun sequence
NZ_ADFQ01000054
3.1 KB
5 CDS

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contig00077, whole genome shotgun sequence
NZ_ADFQ01000055
74.1 KB
64 CDS

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contig00089, whole genome shotgun sequence
NZ_ADFQ01000056
4.7 KB
5 CDS

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contig00081, whole genome shotgun sequence
NZ_ADFQ01000057
1.9 KB
3 CDS

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contig00157, whole genome shotgun sequence
NZ_ADFQ01000058
30.0 KB
33 CDS

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contig00111, whole genome shotgun sequence
NZ_ADFQ01000059
5.1 KB
4 CDS

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contig00100, whole genome shotgun sequence
NZ_ADFQ01000060
648 bytes
1 CDS

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contig00069, whole genome shotgun sequence
NZ_ADFQ01000061
1.1 KB
2 CDS

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contig00133, whole genome shotgun sequence
NZ_ADFQ01000062
8.4 KB
7 CDS

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contig00116, whole genome shotgun sequence
NZ_ADFQ01000063
12.3 KB
6 CDS

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contig00024, whole genome shotgun sequence
NZ_ADFQ01000064
98.7 KB
87 CDS

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contig00091, whole genome shotgun sequence
NZ_ADFQ01000065
612 bytes
0 CDS

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contig00079, whole genome shotgun sequence
NZ_ADFQ01000066
39.3 KB
36 CDS

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contig00101, whole genome shotgun sequence
NZ_ADFQ01000067
1.0 KB
1 CDS

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contig00106, whole genome shotgun sequence
NZ_ADFQ01000068
635 bytes
1 CDS

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contig00102, whole genome shotgun sequence
NZ_ADFQ01000069
7.2 KB
2 CDS

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contig00002, whole genome shotgun sequence
NZ_ADFQ01000070
4.1 KB
4 CDS

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contig00022, whole genome shotgun sequence
NZ_ADFQ01000071
7.9 KB
7 CDS

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contig00001, whole genome shotgun sequence
NZ_ADFQ01000072
11.2 KB
9 CDS

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contig00176, whole genome shotgun sequence
NZ_ADFQ01000073
9.9 KB
8 CDS

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contig00138, whole genome shotgun sequence
NZ_ADFQ01000074
1.2 KB
2 CDS

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contig00038, whole genome shotgun sequence
NZ_ADFQ01000075
104.7 KB
84 CDS

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contig00156, whole genome shotgun sequence
NZ_ADFQ01000076
570 bytes
1 CDS

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contig00168, whole genome shotgun sequence
NZ_ADFQ01000077
1.2 KB
1 CDS

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contig00126, whole genome shotgun sequence
NZ_ADFQ01000078
7.1 KB
5 CDS

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contig00033, whole genome shotgun sequence
NZ_ADFQ01000079
10.0 KB
9 CDS

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contig00036, whole genome shotgun sequence
NZ_ADFQ01000080
1.9 KB
1 CDS

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contig00129, whole genome shotgun sequence
NZ_ADFQ01000081
1.1 KB
1 CDS

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contig00115, whole genome shotgun sequence
NZ_ADFQ01000082
10.6 KB
7 CDS

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contig00063, whole genome shotgun sequence
NZ_ADFQ01000083
58.0 KB
52 CDS

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contig00018, whole genome shotgun sequence
NZ_ADFQ01000084
32.2 KB
32 CDS

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contig00172, whole genome shotgun sequence
NZ_ADFQ01000085
88.3 KB
76 CDS

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contig00103, whole genome shotgun sequence
NZ_ADFQ01000086
190.0 KB
162 CDS

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contig00087, whole genome shotgun sequence
NZ_ADFQ01000087
12.7 KB
12 CDS

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contig00074, whole genome shotgun sequence
NZ_ADFQ01000088
525 bytes
1 CDS

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contig00032, whole genome shotgun sequence
NZ_ADFQ01000089
39.3 KB
29 CDS

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contig00161, whole genome shotgun sequence
NZ_ADFQ01000090
5.3 KB
5 CDS

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contig00078, whole genome shotgun sequence
NZ_ADFQ01000091
9.3 KB
2 CDS

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contig00123, whole genome shotgun sequence
NZ_ADFQ01000092
4.1 KB
6 CDS

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contig00030, whole genome shotgun sequence
NZ_ADFQ01000093
15.2 KB
9 CDS

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contig00066, whole genome shotgun sequence
NZ_ADFQ01000094
735 bytes
1 CDS

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contig00070, whole genome shotgun sequence
NZ_ADFQ01000095
9.0 KB
7 CDS

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contig00031, whole genome shotgun sequence
NZ_ADFQ01000096
6.3 KB
4 CDS

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contig00016, whole genome shotgun sequence
NZ_ADFQ01000097
1.3 KB
2 CDS

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contig00162, whole genome shotgun sequence
NZ_ADFQ01000098
56.2 KB
42 CDS

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contig00150, whole genome shotgun sequence
NZ_ADFQ01000099
1.4 KB
2 CDS

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contig00007, whole genome shotgun sequence
NZ_ADFQ01000100
15.1 KB
12 CDS

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contig00132, whole genome shotgun sequence
NZ_ADFQ01000101
1.4 KB
2 CDS

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contig00003, whole genome shotgun sequence
NZ_ADFQ01000102
35.3 KB
28 CDS

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contig00059, whole genome shotgun sequence
NZ_ADFQ01000103
629 bytes
0 CDS

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contig00147, whole genome shotgun sequence
NZ_ADFQ01000104
556 bytes
0 CDS

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contig00170, whole genome shotgun sequence
NZ_ADFQ01000105
96.4 KB
83 CDS

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contig00011, whole genome shotgun sequence
NZ_ADFQ01000106
663 bytes
1 CDS

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contig00076, whole genome shotgun sequence
NZ_ADFQ01000107
15.2 KB
16 CDS

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contig00071, whole genome shotgun sequence
NZ_ADFQ01000108
1.4 KB
2 CDS

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contig00010, whole genome shotgun sequence
NZ_ADFQ01000109
30.8 KB
23 CDS

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contig00061, whole genome shotgun sequence
NZ_ADFQ01000110
14.4 KB
12 CDS

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contig00154, whole genome shotgun sequence
NZ_ADFQ01000111
4.3 KB
3 CDS

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contig00004, whole genome shotgun sequence
NZ_ADFQ01000112
27.8 KB
22 CDS

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contig00057, whole genome shotgun sequence
NZ_ADFQ01000113
13.1 KB
9 CDS

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contig00060, whole genome shotgun sequence
NZ_ADFQ01000114
16.5 KB
18 CDS

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contig00177, whole genome shotgun sequence
NZ_ADFQ01000115
2.9 KB
3 CDS

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contig00067, whole genome shotgun sequence
NZ_ADFQ01000116
1.0 KB
1 CDS

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contig00005, whole genome shotgun sequence
NZ_ADFQ01000117
912 bytes
1 CDS

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Taxonomy

External Links

Prevotella amnii CRIS 21A-A

Search Genome

Sequences

PubMed Search for Prevotella amnii CRIS 21A-A

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