Prevotella bivia JCVIHMP010

J. Craig Venter Institute

Genome Size: 2.4 megabases, GC Content: 39.8%, Released Date: Dec. 30, 2009 #20534

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ADFO01000001
546 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADFO01000002
9.8 KB
11 CDS

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whole genome shotgun sequence
NZ_ADFO01000003
48.0 KB
35 CDS

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whole genome shotgun sequence
NZ_ADFO01000004
45.8 KB
41 CDS

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whole genome shotgun sequence
NZ_ADFO01000005
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000006
533 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADFO01000007
923 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000008
8.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ADFO01000009
111.4 KB
110 CDS

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whole genome shotgun sequence
NZ_ADFO01000010
20.9 KB
20 CDS

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whole genome shotgun sequence
NZ_ADFO01000011
4.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000012
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ADFO01000013
581 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADFO01000014
27.8 KB
28 CDS

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whole genome shotgun sequence
NZ_ADFO01000015
693 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000016
898 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000017
31.4 KB
27 CDS

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whole genome shotgun sequence
NZ_ADFO01000018
34.0 KB
31 CDS

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whole genome shotgun sequence
NZ_ADFO01000019
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000020
820 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000021
7.4 KB
7 CDS

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whole genome shotgun sequence
NZ_ADFO01000022
2.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000023
555 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000024
4.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ADFO01000025
5.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ADFO01000026
938 bytes
3 CDS

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whole genome shotgun sequence
NZ_ADFO01000027
27.1 KB
22 CDS

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whole genome shotgun sequence
NZ_ADFO01000028
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000029
7.7 KB
8 CDS

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whole genome shotgun sequence
NZ_ADFO01000030
2.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ADFO01000031
42.2 KB
36 CDS

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whole genome shotgun sequence
NZ_ADFO01000032
2.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000033
33.1 KB
21 CDS

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whole genome shotgun sequence
NZ_ADFO01000034
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000035
25.9 KB
20 CDS

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whole genome shotgun sequence
NZ_ADFO01000036
34.5 KB
33 CDS

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whole genome shotgun sequence
NZ_ADFO01000037
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ADFO01000038
3.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ADFO01000039
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000040
9.0 KB
6 CDS

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whole genome shotgun sequence
NZ_ADFO01000041
1.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ADFO01000042
15.2 KB
14 CDS

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whole genome shotgun sequence
NZ_ADFO01000043
8.4 KB
10 CDS

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whole genome shotgun sequence
NZ_ADFO01000044
51.9 KB
47 CDS

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whole genome shotgun sequence
NZ_ADFO01000045
13.6 KB
14 CDS

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whole genome shotgun sequence
NZ_ADFO01000046
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000047
2.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000048
26.3 KB
21 CDS

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whole genome shotgun sequence
NZ_ADFO01000049
65.8 KB
56 CDS

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whole genome shotgun sequence
NZ_ADFO01000050
876 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000051
45.1 KB
40 CDS

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whole genome shotgun sequence
NZ_ADFO01000052
12.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ADFO01000053
66.2 KB
50 CDS

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whole genome shotgun sequence
NZ_ADFO01000054
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ADFO01000055
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000056
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000057
25.5 KB
20 CDS

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whole genome shotgun sequence
NZ_ADFO01000058
27.0 KB
28 CDS

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whole genome shotgun sequence
NZ_ADFO01000059
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000060
7.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ADFO01000061
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ADFO01000062
19.4 KB
19 CDS

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whole genome shotgun sequence
NZ_ADFO01000063
15.4 KB
16 CDS

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whole genome shotgun sequence
NZ_ADFO01000064
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000065
993 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000066
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000067
80.1 KB
67 CDS

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whole genome shotgun sequence
NZ_ADFO01000068
20.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ADFO01000069
6.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ADFO01000070
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000071
573 bytes
0 CDS

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whole genome shotgun sequence
NZ_ADFO01000072
7.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ADFO01000073
14.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ADFO01000074
2.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000075
509 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000076
21.4 KB
19 CDS

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whole genome shotgun sequence
NZ_ADFO01000077
21.9 KB
24 CDS

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whole genome shotgun sequence
NZ_ADFO01000078
7.0 KB
8 CDS

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whole genome shotgun sequence
NZ_ADFO01000079
3.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ADFO01000080
647 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000081
47.5 KB
37 CDS

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whole genome shotgun sequence
NZ_ADFO01000082
15.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ADFO01000083
24.8 KB
22 CDS

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whole genome shotgun sequence
NZ_ADFO01000084
178.6 KB
146 CDS

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whole genome shotgun sequence
NZ_ADFO01000085
32.8 KB
29 CDS

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whole genome shotgun sequence
NZ_ADFO01000086
21.7 KB
17 CDS

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whole genome shotgun sequence
NZ_ADFO01000087
71.7 KB
66 CDS

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whole genome shotgun sequence
NZ_ADFO01000088
45.8 KB
39 CDS

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whole genome shotgun sequence
NZ_ADFO01000089
30.5 KB
27 CDS

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whole genome shotgun sequence
NZ_ADFO01000090
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000091
8.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ADFO01000092
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000093
550 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000094
3.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000095
76.9 KB
58 CDS

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whole genome shotgun sequence
NZ_ADFO01000096
1.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ADFO01000097
7.1 KB
9 CDS

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whole genome shotgun sequence
NZ_ADFO01000098
20.7 KB
19 CDS

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whole genome shotgun sequence
NZ_ADFO01000099
986 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000100
933 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000101
106.9 KB
87 CDS

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whole genome shotgun sequence
NZ_ADFO01000102
16.4 KB
14 CDS

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whole genome shotgun sequence
NZ_ADFO01000103
875 bytes
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000104
12.6 KB
9 CDS

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whole genome shotgun sequence
NZ_ADFO01000105
53.4 KB
52 CDS

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whole genome shotgun sequence
NZ_ADFO01000106
8.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ADFO01000107
13.2 KB
12 CDS

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whole genome shotgun sequence
NZ_ADFO01000108
31.7 KB
26 CDS

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whole genome shotgun sequence
NZ_ADFO01000109
820 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000110
2.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ADFO01000111
806 bytes
2 CDS

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whole genome shotgun sequence
NZ_ADFO01000112
538 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000113
66.0 KB
51 CDS

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whole genome shotgun sequence
NZ_ADFO01000114
56.8 KB
45 CDS

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whole genome shotgun sequence
NZ_ADFO01000115
21.9 KB
21 CDS

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whole genome shotgun sequence
NZ_ADFO01000116
16.9 KB
15 CDS

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whole genome shotgun sequence
NZ_ADFO01000117
776 bytes
1 CDS

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whole genome shotgun sequence
NZ_ADFO01000118
35.7 KB
29 CDS

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whole genome shotgun sequence
NZ_ADFO01000119
34.8 KB
28 CDS

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whole genome shotgun sequence
NZ_ADFO01000120
59.2 KB
47 CDS

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whole genome shotgun sequence
NZ_ADFO01000121
59.4 KB
50 CDS

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Taxonomy

External Links

Prevotella bivia JCVIHMP010

Search Genome

Sequences

PubMed Search for Prevotella bivia JCVIHMP010

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