Prevotella ruminicola 23

TIGR

Genome Size: 3.6 megabases, GC Content: 47.7%, Released Date: April 9, 2010 #19995

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP002006
3.5 MB
2763 CDS

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Artemis Viewer

References

Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche
Purushe,J., Fouts,D.E., Morrison,M., White,B.A., Mackie,R.I., Coutinho,P.M., Henrissat,B. and Nelson,K.E. Microb. Ecol. 60 (4), 721-729 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Prevotella ruminicola 23

Search Genome

Sequences

References

Related Genomes