Prochlorococcus marinus subsp. pastoris str. CCMP1986

DOE Joint Genome Institute

Genome Size: 1.7 megabases, GC Content: 30.8%, Released Date: Aug. 15, 2003 #17314

Completed genome

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Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Sequences

complete genome
NC_005072
1.6 MB
1717 CDS

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References

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
Rocap,G., Larimer,F.W., Lamerdin,J., Malfatti,S., Chain,P., Ahlgren,N.A., Arellano,A., Coleman,M., Hauser,L., Hess,W.R., Johnson,Z.I., Land,M., Lindell,D., Post,A.F., Regala,W., Shah,M., Shaw,S.L., Steglich,C., Sullivan,M.B., Ting,C.S., Tolonen,A., Webb,E.A., Zinser,E.R. and Chisholm,S.W. Nature 424 (6952), 1042-1047 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Prochlorococcus marinus subsp. pastoris str. CCMP1986

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Sequences

References

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