Providencia alcalifaciens DSM 30120

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 41.8%, Released Date: Oct. 23, 2008 #18316

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABXW01000001
6.5 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000002
24.3 KB
43 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000003
37.6 KB
34 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000004
343.5 KB
343 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000005
52.4 KB
54 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000006
2.9 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000007
115.8 KB
115 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000008
1.4 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000009
622 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000010
623 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000011
17.0 KB
35 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000012
18.2 KB
37 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000013
616 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000014
258.2 KB
254 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000015
44.0 KB
45 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000016
55.1 KB
58 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000017
124.4 KB
144 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000018
72.6 KB
64 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000019
135.5 KB
128 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000020
516 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000021
524 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000022
511 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000023
501 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000024
514 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000025
537 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000026
521 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000027
503 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000028
554 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000029
522 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000030
506 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000031
510 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000032
509 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000033
502 bytes
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000034
536 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000035
538 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000036
508 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000037
510 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000038
508 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000039
3.1 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000040
7.7 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000041
41.2 KB
39 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000042
129.5 KB
123 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000043
2.3 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000044
59.5 KB
50 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000045
111.2 KB
106 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000046
242.5 KB
278 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000047
249.4 KB
251 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000048
15.4 KB
22 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000049
169.6 KB
144 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000050
5.2 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000051
84.9 KB
119 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000052
239.8 KB
235 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000053
339.6 KB
345 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000054
1.2 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000055
2.1 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000056
942 bytes
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000057
598 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000058
1.0 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000059
11.7 KB
14 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000060
83.3 KB
80 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000061
716 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000062
233.5 KB
219 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000063
4.0 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000064
2.3 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000065
1.2 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000066
4.1 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000067
584 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000068
49.1 KB
44 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000069
2.9 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000070
200.5 KB
189 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000071
1.7 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000072
1.2 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000073
115.8 KB
111 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000074
99.7 KB
113 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000075
671 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000076
6.8 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000077
20.4 KB
18 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000078
51.2 KB
49 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABXW01000079
16.3 KB
24 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Providencia alcalifaciens DSM 30120

Search Genome

Sequences

PubMed Search for Providencia alcalifaciens DSM 30120

Related Genomes