Pseudoalteromonas haloplanktis TAC125

CNRS , Genoscope

Genome Size: 3.84 megabases, GC Content: 40.1%, Released Date: Oct. 3, 2005 #17319

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

chromosome I, complete genome
NC_007481
3.1 MB
2939 CDS

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chromosome II
NC_007482
620.4 KB
546 CDS

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References

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
Medigue,C., Krin,E., Pascal,G., Barbe,V., Bernsel,A., Bertin,P.N., Cheung,F., Cruveiller,S., D'Amico,S., Duilio,A., Fang,G., Feller,G., Ho,C., Mangenot,S., Marino,G., Nilsson,J., Parrilli,E., Rocha,E.P., Rouy,Z., Sekowska,A., Tutino,M.L., Vallenet,D., von Heijne,G. and Danchin,A. Genome Res. 15 (10), 1325-1335 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Pseudoalteromonas haloplanktis TAC125

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Sequences

References

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