Pseudoalteromonas tunicata D2

J. Craig Venter Institute

Genome Size: 3.5 megabases, GC Content: 39.9%, Released Date: Feb. 24, 2006 #18320

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAOH01000001
963.2 KB
802 CDS

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whole genome shotgun sequence
NZ_AAOH01000002
844.3 KB
776 CDS

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whole genome shotgun sequence
NZ_AAOH01000003
644.8 KB
613 CDS

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whole genome shotgun sequence
NZ_AAOH01000004
579.6 KB
594 CDS

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whole genome shotgun sequence
NZ_AAOH01000005
477.0 KB
427 CDS

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whole genome shotgun sequence
NZ_AAOH01000006
395.4 KB
367 CDS

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whole genome shotgun sequence
NZ_AAOH01000007
258.1 KB
234 CDS

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whole genome shotgun sequence
NZ_AAOH01000008
146.2 KB
146 CDS

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whole genome shotgun sequence
NZ_AAOH01000009
141.1 KB
137 CDS

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whole genome shotgun sequence
NZ_AAOH01000010
70.9 KB
67 CDS

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whole genome shotgun sequence
NZ_AAOH01000011
59.3 KB
60 CDS

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whole genome shotgun sequence
NZ_AAOH01000012
58.5 KB
50 CDS

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whole genome shotgun sequence
NZ_AAOH01000013
54.7 KB
50 CDS

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whole genome shotgun sequence
NZ_AAOH01000014
50.8 KB
61 CDS

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whole genome shotgun sequence
NZ_AAOH01000015
32.6 KB
28 CDS

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whole genome shotgun sequence
NZ_AAOH01000016
26.7 KB
23 CDS

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whole genome shotgun sequence
NZ_AAOH01000017
19.2 KB
15 CDS

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whole genome shotgun sequence
NZ_AAOH01000018
9.3 KB
17 CDS

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whole genome shotgun sequence
NZ_AAOH01000019
4.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOH01000020
2.7 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOH01000021
1.8 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOH01000022
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOH01000023
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOH01000024
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOH01000025
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOH01000026
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOH01000027
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOH01000028
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOH01000029
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOH01000030
1.2 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOH01000031
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOH01000032
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOH01000033
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOH01000034
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOH01000035
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOH01000036
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_AAOH01000037
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AAOH01000038
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOH01000039
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_AAOH01000040
1020 bytes
1 CDS

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whole genome shotgun sequence
NZ_AAOH01000041
1017 bytes
2 CDS

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whole genome shotgun sequence
NZ_AAOH01000042
1006 bytes
2 CDS

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Taxonomy

External Links

Pseudoalteromonas tunicata D2

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Sequences

PubMed Search for Pseudoalteromonas tunicata D2

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