Pseudomonas aeruginosa UCBPP-PA14

Massachusetts General Hospital , Harvard Medical School Partners Healthcare Center for Genetics and Genomics

Genome Size: 6.5 megabases, GC Content: 66.3%, Released Date: Oct. 6, 2006 #17323

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_008463
6.2 MB
5892 CDS

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References

Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial
Lee,D.G., Urbach,J.M., Wu,G., Liberati,N.T., Feinbaum,R.L., Miyata,S., Diggins,L.T., He,J., Saucier,M., Deziel,E., Friedman,L., Li,L., Grills,G., Montgomery,K., Kucherlapati,R., Rahme,L.G. and Ausubel,F.M. Genome Biol. 7 (10), R90 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Pseudomonas aeruginosa UCBPP-PA14

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Sequences

References

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