Pseudomonas fluorescens WH6

Oregon State University

Genome Size: 6.3 megabases, GC Content: 60.5%, Released Date: Nov. 5, 2010 #20614

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

WH6_1, whole genome shotgun sequence
NZ_AEAZ01000001
113.1 KB
226 CDS

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WH6_2, whole genome shotgun sequence
NZ_AEAZ01000002
63.0 KB
100 CDS

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WH6_3, whole genome shotgun sequence
NZ_AEAZ01000003
163.0 KB
300 CDS

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WH6_4, whole genome shotgun sequence
NZ_AEAZ01000004
390.7 KB
738 CDS

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WH6_5, whole genome shotgun sequence
NZ_AEAZ01000005
407.3 KB
804 CDS

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WH6_6, whole genome shotgun sequence
NZ_AEAZ01000006
116.8 KB
212 CDS

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WH6_7, whole genome shotgun sequence
NZ_AEAZ01000007
435.2 KB
870 CDS

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WH6_8, whole genome shotgun sequence
NZ_AEAZ01000008
108.8 KB
228 CDS

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WH6_9, whole genome shotgun sequence
NZ_AEAZ01000009
107.8 KB
206 CDS

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WH6_10, whole genome shotgun sequence
NZ_AEAZ01000010
56.8 KB
116 CDS

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WH6_11, whole genome shotgun sequence
NZ_AEAZ01000011
67.6 KB
134 CDS

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WH6_12, whole genome shotgun sequence
NZ_AEAZ01000012
97.8 KB
188 CDS

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WH6_13, whole genome shotgun sequence
NZ_AEAZ01000013
184.1 KB
352 CDS

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WH6_14, whole genome shotgun sequence
NZ_AEAZ01000014
21.0 KB
48 CDS

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WH6_15, whole genome shotgun sequence
NZ_AEAZ01000015
101.7 KB
218 CDS

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WH6_16, whole genome shotgun sequence
NZ_AEAZ01000016
7.2 KB
2 CDS

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WH6_17, whole genome shotgun sequence
NZ_AEAZ01000017
38.6 KB
72 CDS

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WH6_18, whole genome shotgun sequence
NZ_AEAZ01000018
198.5 KB
340 CDS

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WH6_19, whole genome shotgun sequence
NZ_AEAZ01000019
785.9 KB
1392 CDS

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WH6_20, whole genome shotgun sequence
NZ_AEAZ01000020
791 bytes
2 CDS

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WH6_22, whole genome shotgun sequence
NZ_AEAZ01000022
32.6 KB
70 CDS

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WH6_23, whole genome shotgun sequence
NZ_AEAZ01000023
71.4 KB
162 CDS

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WH6_24, whole genome shotgun sequence
NZ_AEAZ01000024
22.1 KB
26 CDS

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WH6_25, whole genome shotgun sequence
NZ_AEAZ01000025
32.5 KB
54 CDS

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WH6_26, whole genome shotgun sequence
NZ_AEAZ01000026
280.1 KB
506 CDS

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WH6_27, whole genome shotgun sequence
NZ_AEAZ01000027
173.8 KB
388 CDS

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WH6_28, whole genome shotgun sequence
NZ_AEAZ01000028
4.3 KB
8 CDS

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WH6_29, whole genome shotgun sequence
NZ_AEAZ01000029
49.2 KB
104 CDS

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WH6_30, whole genome shotgun sequence
NZ_AEAZ01000030
9.0 KB
12 CDS

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WH6_31, whole genome shotgun sequence
NZ_AEAZ01000031
3.1 KB
2 CDS

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WH6_32, whole genome shotgun sequence
NZ_AEAZ01000032
151.3 KB
286 CDS

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WH6_33, whole genome shotgun sequence
NZ_AEAZ01000033
274.7 KB
530 CDS

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WH6_34, whole genome shotgun sequence
NZ_AEAZ01000034
78.5 KB
160 CDS

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WH6_35, whole genome shotgun sequence
NZ_AEAZ01000035
115.4 KB
246 CDS

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WH6_36, whole genome shotgun sequence
NZ_AEAZ01000036
32.9 KB
66 CDS

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WH6_37, whole genome shotgun sequence
NZ_AEAZ01000037
167.6 KB
310 CDS

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WH6_38, whole genome shotgun sequence
NZ_AEAZ01000038
99.6 KB
202 CDS

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WH6_39, whole genome shotgun sequence
NZ_AEAZ01000039
167.9 KB
310 CDS

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WH6_40, whole genome shotgun sequence
NZ_AEAZ01000040
85.0 KB
176 CDS

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WH6_41, whole genome shotgun sequence
NZ_AEAZ01000041
89.3 KB
192 CDS

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WH6_42, whole genome shotgun sequence
NZ_AEAZ01000042
182.1 KB
352 CDS

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WH6_43, whole genome shotgun sequence
NZ_AEAZ01000043
111.8 KB
238 CDS

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WH6_44, whole genome shotgun sequence
NZ_AEAZ01000044
4.5 KB
2 CDS

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WH6_45, whole genome shotgun sequence
NZ_AEAZ01000045
2.8 KB
4 CDS

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WH6_46, whole genome shotgun sequence
NZ_AEAZ01000046
1.8 KB
4 CDS

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WH6_47, whole genome shotgun sequence
NZ_AEAZ01000047
2.8 KB
2 CDS

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WH6_48, whole genome shotgun sequence
NZ_AEAZ01000048
2.3 KB
2 CDS

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WH6_49, whole genome shotgun sequence
NZ_AEAZ01000049
1.9 KB
0 CDS

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WH6_50, whole genome shotgun sequence
NZ_AEAZ01000050
3.3 KB
0 CDS

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WH6_51, whole genome shotgun sequence
NZ_AEAZ01000051
1.3 KB
0 CDS

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WH6_52, whole genome shotgun sequence
NZ_AEAZ01000052
1.1 KB
2 CDS

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WH6_53, whole genome shotgun sequence
NZ_AEAZ01000053
332.9 KB
638 CDS

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References

An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6
Kimbrel,J.A., Givan,S.A., Halgren,A.B., Creason,A.L., Mills,D.I., Banowetz,G.M., Armstrong,D.J. and Chang,J.H. BMC Genomics 11, 522 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Pseudomonas fluorescens WH6

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Sequences

References

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