Pseudomonas syringae pv. tomato T1

The Sainsbury Laboratory

GC Content: 58.6%, Released Date: Nov. 21, 2008 #18328

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABSM01000001
327.5 KB
301 CDS

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whole genome shotgun sequence
NZ_ABSM01000002
263.2 KB
225 CDS

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whole genome shotgun sequence
NZ_ABSM01000003
262.9 KB
253 CDS

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whole genome shotgun sequence
NZ_ABSM01000004
254.1 KB
286 CDS

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whole genome shotgun sequence
NZ_ABSM01000005
243.8 KB
237 CDS

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whole genome shotgun sequence
NZ_ABSM01000006
233.6 KB
194 CDS

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whole genome shotgun sequence
NZ_ABSM01000007
184.1 KB
167 CDS

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whole genome shotgun sequence
NZ_ABSM01000008
182.1 KB
173 CDS

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whole genome shotgun sequence
NZ_ABSM01000009
181.6 KB
175 CDS

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whole genome shotgun sequence
NZ_ABSM01000010
179.8 KB
178 CDS

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whole genome shotgun sequence
NZ_ABSM01000011
168.4 KB
150 CDS

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whole genome shotgun sequence
NZ_ABSM01000012
165.0 KB
152 CDS

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whole genome shotgun sequence
NZ_ABSM01000013
160.2 KB
147 CDS

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whole genome shotgun sequence
NZ_ABSM01000014
148.9 KB
171 CDS

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whole genome shotgun sequence
NZ_ABSM01000015
146.6 KB
134 CDS

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whole genome shotgun sequence
NZ_ABSM01000016
145.7 KB
139 CDS

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whole genome shotgun sequence
NZ_ABSM01000017
137.9 KB
147 CDS

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whole genome shotgun sequence
NZ_ABSM01000018
134.9 KB
111 CDS

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whole genome shotgun sequence
NZ_ABSM01000019
128.8 KB
110 CDS

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whole genome shotgun sequence
NZ_ABSM01000020
119.9 KB
109 CDS

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whole genome shotgun sequence
NZ_ABSM01000021
119.8 KB
112 CDS

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whole genome shotgun sequence
NZ_ABSM01000022
113.4 KB
95 CDS

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whole genome shotgun sequence
NZ_ABSM01000023
108.1 KB
104 CDS

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whole genome shotgun sequence
NZ_ABSM01000024
87.3 KB
47 CDS

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whole genome shotgun sequence
NZ_ABSM01000025
83.5 KB
98 CDS

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whole genome shotgun sequence
NZ_ABSM01000026
81.5 KB
74 CDS

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whole genome shotgun sequence
NZ_ABSM01000027
79.4 KB
87 CDS

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whole genome shotgun sequence
NZ_ABSM01000028
77.0 KB
73 CDS

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whole genome shotgun sequence
NZ_ABSM01000029
74.7 KB
74 CDS

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whole genome shotgun sequence
NZ_ABSM01000030
73.4 KB
71 CDS

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whole genome shotgun sequence
NZ_ABSM01000031
72.8 KB
67 CDS

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whole genome shotgun sequence
NZ_ABSM01000032
72.6 KB
59 CDS

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whole genome shotgun sequence
NZ_ABSM01000033
60.6 KB
58 CDS

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whole genome shotgun sequence
NZ_ABSM01000034
58.7 KB
60 CDS

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whole genome shotgun sequence
NZ_ABSM01000035
58.5 KB
54 CDS

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whole genome shotgun sequence
NZ_ABSM01000036
58.5 KB
52 CDS

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whole genome shotgun sequence
NZ_ABSM01000037
57.1 KB
53 CDS

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whole genome shotgun sequence
NZ_ABSM01000038
50.7 KB
40 CDS

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whole genome shotgun sequence
NZ_ABSM01000039
45.8 KB
40 CDS

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whole genome shotgun sequence
NZ_ABSM01000040
45.8 KB
37 CDS

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whole genome shotgun sequence
NZ_ABSM01000041
45.3 KB
51 CDS

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whole genome shotgun sequence
NZ_ABSM01000042
40.6 KB
36 CDS

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whole genome shotgun sequence
NZ_ABSM01000043
37.7 KB
36 CDS

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whole genome shotgun sequence
NZ_ABSM01000044
35.7 KB
35 CDS

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whole genome shotgun sequence
NZ_ABSM01000045
34.7 KB
34 CDS

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whole genome shotgun sequence
NZ_ABSM01000046
34.5 KB
31 CDS

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whole genome shotgun sequence
NZ_ABSM01000047
32.0 KB
32 CDS

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whole genome shotgun sequence
NZ_ABSM01000048
30.3 KB
34 CDS

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whole genome shotgun sequence
NZ_ABSM01000049
29.8 KB
34 CDS

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whole genome shotgun sequence
NZ_ABSM01000050
29.4 KB
33 CDS

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whole genome shotgun sequence
NZ_ABSM01000051
28.6 KB
27 CDS

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whole genome shotgun sequence
NZ_ABSM01000052
27.9 KB
30 CDS

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whole genome shotgun sequence
NZ_ABSM01000053
23.8 KB
22 CDS

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whole genome shotgun sequence
NZ_ABSM01000054
23.5 KB
32 CDS

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whole genome shotgun sequence
NZ_ABSM01000055
22.8 KB
19 CDS

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whole genome shotgun sequence
NZ_ABSM01000056
21.4 KB
25 CDS

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whole genome shotgun sequence
NZ_ABSM01000057
20.1 KB
18 CDS

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whole genome shotgun sequence
NZ_ABSM01000058
18.1 KB
18 CDS

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whole genome shotgun sequence
NZ_ABSM01000059
17.6 KB
27 CDS

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whole genome shotgun sequence
NZ_ABSM01000060
17.4 KB
19 CDS

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whole genome shotgun sequence
NZ_ABSM01000061
12.7 KB
13 CDS

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whole genome shotgun sequence
NZ_ABSM01000062
12.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ABSM01000063
11.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ABSM01000064
8.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABSM01000065
8.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABSM01000066
8.2 KB
8 CDS

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whole genome shotgun sequence
NZ_ABSM01000067
7.6 KB
10 CDS

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whole genome shotgun sequence
NZ_ABSM01000068
7.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABSM01000069
6.4 KB
8 CDS

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whole genome shotgun sequence
NZ_ABSM01000070
6.2 KB
8 CDS

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whole genome shotgun sequence
NZ_ABSM01000071
5.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000072
4.9 KB
8 CDS

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whole genome shotgun sequence
NZ_ABSM01000073
4.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ABSM01000074
4.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABSM01000075
4.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABSM01000076
4.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ABSM01000077
3.8 KB
7 CDS

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whole genome shotgun sequence
NZ_ABSM01000078
3.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ABSM01000079
3.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000080
3.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABSM01000081
3.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABSM01000082
2.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABSM01000083
2.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000084
2.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000085
2.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000086
2.4 KB
5 CDS

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whole genome shotgun sequence
NZ_ABSM01000087
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000088
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000089
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000090
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABSM01000091
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ABSM01000092
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABSM01000093
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000094
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000095
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000096
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000097
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000098
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000099
1018 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000100
1017 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000101
929 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000102
928 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000103
819 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000104
777 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000105
730 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000106
642 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000107
639 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABSM01000108
605 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000109
589 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABSM01000110
584 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000111
560 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABSM01000112
554 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000113
466 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000114
462 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABSM01000115
412 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABSM01000116
390 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABSM01000117
312 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABSM01000118
310 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABSM01000119
269 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABSM01000120
267 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABSM01000121
252 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABSM01000122
219 bytes
0 CDS

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References

A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000
Almeida,N.F., Yan,S., Lindeberg,M., Studholme,D.J., Schneider,D.J., Condon,B., Liu,H., Viana,C.J., Warren,A., Evans,C., Kemen,E., Maclean,D., Angot,A., Martin,G.B., Jones,J.D., Collmer,A., Setubal,J.C. and Vinatzer,B.A. Mol. Plant Microbe Interact. 22 (1), 52-62 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Pseudomonas syringae pv. tomato T1

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Sequences

References

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