Raphidiopsis brookii D9

FLI Jena

Genome Size: 3.2 megabases, GC Content: 40.1%, Released Date: Dec. 15, 2009 #20639

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACYB01000001
36.7 KB
32 CDS

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whole genome shotgun sequence
NZ_ACYB01000002
27.2 KB
21 CDS

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whole genome shotgun sequence
NZ_ACYB01000003
3.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ACYB01000004
140.4 KB
131 CDS

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whole genome shotgun sequence
NZ_ACYB01000005
60.7 KB
58 CDS

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whole genome shotgun sequence
NZ_ACYB01000006
82.8 KB
78 CDS

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whole genome shotgun sequence
NZ_ACYB01000007
90.0 KB
77 CDS

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whole genome shotgun sequence
NZ_ACYB01000008
25.5 KB
30 CDS

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whole genome shotgun sequence
NZ_ACYB01000009
3.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYB01000010
60.0 KB
60 CDS

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whole genome shotgun sequence
NZ_ACYB01000011
70.1 KB
65 CDS

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whole genome shotgun sequence
NZ_ACYB01000012
11.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYB01000013
5.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ACYB01000014
3.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYB01000015
12.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ACYB01000016
81.6 KB
89 CDS

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whole genome shotgun sequence
NZ_ACYB01000017
28.9 KB
27 CDS

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whole genome shotgun sequence
NZ_ACYB01000018
5.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYB01000019
84.1 KB
72 CDS

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whole genome shotgun sequence
NZ_ACYB01000020
124.8 KB
119 CDS

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whole genome shotgun sequence
NZ_ACYB01000021
88.5 KB
87 CDS

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whole genome shotgun sequence
NZ_ACYB01000022
100.6 KB
93 CDS

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whole genome shotgun sequence
NZ_ACYB01000023
19.9 KB
20 CDS

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whole genome shotgun sequence
NZ_ACYB01000024
27.8 KB
27 CDS

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whole genome shotgun sequence
NZ_ACYB01000025
3.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYB01000026
3.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ACYB01000027
32.1 KB
25 CDS

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whole genome shotgun sequence
NZ_ACYB01000028
5.8 KB
6 CDS

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whole genome shotgun sequence
NZ_ACYB01000029
108.9 KB
106 CDS

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whole genome shotgun sequence
NZ_ACYB01000030
3.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACYB01000031
203.4 KB
191 CDS

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whole genome shotgun sequence
NZ_ACYB01000032
16.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ACYB01000033
15.2 KB
15 CDS

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whole genome shotgun sequence
NZ_ACYB01000034
4.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACYB01000035
514.4 KB
496 CDS

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whole genome shotgun sequence
NZ_ACYB01000036
65.9 KB
59 CDS

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whole genome shotgun sequence
NZ_ACYB01000037
129.3 KB
111 CDS

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whole genome shotgun sequence
NZ_ACYB01000038
123.3 KB
131 CDS

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whole genome shotgun sequence
NZ_ACYB01000039
6.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ACYB01000040
53.2 KB
48 CDS

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whole genome shotgun sequence
NZ_ACYB01000041
3.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACYB01000042
266.0 KB
284 CDS

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whole genome shotgun sequence
NZ_ACYB01000043
7.4 KB
8 CDS

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whole genome shotgun sequence
NZ_ACYB01000044
14.7 KB
16 CDS

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whole genome shotgun sequence
NZ_ACYB01000045
5.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ACYB01000046
234.0 KB
263 CDS

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whole genome shotgun sequence
NZ_ACYB01000047
97.5 KB
100 CDS

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Taxonomy

External Links

Raphidiopsis brookii D9

Search Genome

Sequences

PubMed Search for Raphidiopsis brookii D9

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