Reinekea blandensis MED297

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 52.4%, Released Date: Feb. 24, 2006 #18332

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAOE01000001
469.2 KB
438 CDS

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whole genome shotgun sequence
NZ_AAOE01000002
316.8 KB
257 CDS

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whole genome shotgun sequence
NZ_AAOE01000003
256.4 KB
236 CDS

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whole genome shotgun sequence
NZ_AAOE01000004
241.7 KB
242 CDS

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whole genome shotgun sequence
NZ_AAOE01000005
181.8 KB
177 CDS

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whole genome shotgun sequence
NZ_AAOE01000006
172.1 KB
157 CDS

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whole genome shotgun sequence
NZ_AAOE01000007
160.3 KB
181 CDS

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whole genome shotgun sequence
NZ_AAOE01000008
153.1 KB
154 CDS

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whole genome shotgun sequence
NZ_AAOE01000009
137.5 KB
127 CDS

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whole genome shotgun sequence
NZ_AAOE01000010
135.7 KB
124 CDS

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whole genome shotgun sequence
NZ_AAOE01000011
118.3 KB
118 CDS

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whole genome shotgun sequence
NZ_AAOE01000012
116.9 KB
104 CDS

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whole genome shotgun sequence
NZ_AAOE01000013
116.9 KB
114 CDS

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whole genome shotgun sequence
NZ_AAOE01000014
106.4 KB
113 CDS

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whole genome shotgun sequence
NZ_AAOE01000015
104.8 KB
110 CDS

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whole genome shotgun sequence
NZ_AAOE01000016
83.6 KB
79 CDS

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whole genome shotgun sequence
NZ_AAOE01000017
83.2 KB
79 CDS

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whole genome shotgun sequence
NZ_AAOE01000018
83.1 KB
73 CDS

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whole genome shotgun sequence
NZ_AAOE01000019
78.9 KB
74 CDS

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whole genome shotgun sequence
NZ_AAOE01000020
78.8 KB
77 CDS

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whole genome shotgun sequence
NZ_AAOE01000021
77.7 KB
73 CDS

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whole genome shotgun sequence
NZ_AAOE01000022
67.5 KB
70 CDS

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whole genome shotgun sequence
NZ_AAOE01000023
64.1 KB
63 CDS

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whole genome shotgun sequence
NZ_AAOE01000024
63.2 KB
66 CDS

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whole genome shotgun sequence
NZ_AAOE01000025
61.2 KB
70 CDS

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whole genome shotgun sequence
NZ_AAOE01000026
59.5 KB
58 CDS

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whole genome shotgun sequence
NZ_AAOE01000027
59.2 KB
57 CDS

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whole genome shotgun sequence
NZ_AAOE01000028
49.9 KB
40 CDS

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whole genome shotgun sequence
NZ_AAOE01000029
49.3 KB
44 CDS

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whole genome shotgun sequence
NZ_AAOE01000030
48.7 KB
44 CDS

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whole genome shotgun sequence
NZ_AAOE01000031
45.7 KB
48 CDS

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whole genome shotgun sequence
NZ_AAOE01000032
43.3 KB
47 CDS

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whole genome shotgun sequence
NZ_AAOE01000033
38.4 KB
39 CDS

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whole genome shotgun sequence
NZ_AAOE01000034
36.4 KB
29 CDS

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whole genome shotgun sequence
NZ_AAOE01000035
36.1 KB
35 CDS

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whole genome shotgun sequence
NZ_AAOE01000036
35.9 KB
30 CDS

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whole genome shotgun sequence
NZ_AAOE01000037
33.3 KB
28 CDS

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whole genome shotgun sequence
NZ_AAOE01000038
32.6 KB
38 CDS

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whole genome shotgun sequence
NZ_AAOE01000039
30.8 KB
30 CDS

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whole genome shotgun sequence
NZ_AAOE01000040
30.8 KB
21 CDS

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whole genome shotgun sequence
NZ_AAOE01000041
30.0 KB
32 CDS

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whole genome shotgun sequence
NZ_AAOE01000042
28.9 KB
30 CDS

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whole genome shotgun sequence
NZ_AAOE01000043
27.2 KB
32 CDS

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whole genome shotgun sequence
NZ_AAOE01000044
25.9 KB
26 CDS

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whole genome shotgun sequence
NZ_AAOE01000045
21.7 KB
22 CDS

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whole genome shotgun sequence
NZ_AAOE01000046
19.9 KB
24 CDS

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whole genome shotgun sequence
NZ_AAOE01000047
17.7 KB
18 CDS

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whole genome shotgun sequence
NZ_AAOE01000048
15.4 KB
14 CDS

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whole genome shotgun sequence
NZ_AAOE01000049
13.2 KB
13 CDS

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whole genome shotgun sequence
NZ_AAOE01000050
8.8 KB
21 CDS

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whole genome shotgun sequence
NZ_AAOE01000051
7.8 KB
9 CDS

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whole genome shotgun sequence
NZ_AAOE01000052
6.8 KB
9 CDS

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whole genome shotgun sequence
NZ_AAOE01000053
3.3 KB
5 CDS

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whole genome shotgun sequence
NZ_AAOE01000054
2.7 KB
4 CDS

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whole genome shotgun sequence
NZ_AAOE01000055
2.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOE01000056
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOE01000057
1.8 KB
4 CDS

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whole genome shotgun sequence
NZ_AAOE01000058
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOE01000059
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOE01000060
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AAOE01000061
1.3 KB
1 CDS

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Taxonomy

External Links

Reinekea blandensis MED297

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Sequences

PubMed Search for Reinekea blandensis MED297

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