Rhodobacterales bacterium HTCC2654

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 64.1%, Released Date: Jan. 10, 2006 #18341

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAMT01000001
530.0 KB
538 CDS

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whole genome shotgun sequence
NZ_AAMT01000002
414.3 KB
450 CDS

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whole genome shotgun sequence
NZ_AAMT01000003
334.1 KB
322 CDS

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whole genome shotgun sequence
NZ_AAMT01000004
316.4 KB
320 CDS

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whole genome shotgun sequence
NZ_AAMT01000005
276.9 KB
281 CDS

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whole genome shotgun sequence
NZ_AAMT01000006
264.7 KB
292 CDS

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whole genome shotgun sequence
NZ_AAMT01000007
234.6 KB
197 CDS

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whole genome shotgun sequence
NZ_AAMT01000008
201.3 KB
374 CDS

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whole genome shotgun sequence
NZ_AAMT01000009
174.1 KB
190 CDS

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whole genome shotgun sequence
NZ_AAMT01000010
140.2 KB
152 CDS

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whole genome shotgun sequence
NZ_AAMT01000011
132.5 KB
116 CDS

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whole genome shotgun sequence
NZ_AAMT01000012
111.1 KB
121 CDS

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whole genome shotgun sequence
NZ_AAMT01000013
104.4 KB
116 CDS

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whole genome shotgun sequence
NZ_AAMT01000014
102.5 KB
114 CDS

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whole genome shotgun sequence
NZ_AAMT01000015
102.0 KB
107 CDS

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whole genome shotgun sequence
NZ_AAMT01000016
91.4 KB
94 CDS

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whole genome shotgun sequence
NZ_AAMT01000017
87.3 KB
87 CDS

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whole genome shotgun sequence
NZ_AAMT01000018
67.6 KB
66 CDS

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whole genome shotgun sequence
NZ_AAMT01000019
66.7 KB
68 CDS

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whole genome shotgun sequence
NZ_AAMT01000020
66.6 KB
69 CDS

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whole genome shotgun sequence
NZ_AAMT01000021
62.5 KB
62 CDS

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whole genome shotgun sequence
NZ_AAMT01000022
55.5 KB
52 CDS

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whole genome shotgun sequence
NZ_AAMT01000023
53.6 KB
65 CDS

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whole genome shotgun sequence
NZ_AAMT01000024
49.7 KB
46 CDS

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whole genome shotgun sequence
NZ_AAMT01000025
44.1 KB
46 CDS

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whole genome shotgun sequence
NZ_AAMT01000026
34.1 KB
34 CDS

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whole genome shotgun sequence
NZ_AAMT01000027
33.2 KB
29 CDS

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whole genome shotgun sequence
NZ_AAMT01000028
30.3 KB
33 CDS

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whole genome shotgun sequence
NZ_AAMT01000029
26.3 KB
26 CDS

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whole genome shotgun sequence
NZ_AAMT01000030
26.1 KB
28 CDS

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whole genome shotgun sequence
NZ_AAMT01000031
26.1 KB
31 CDS

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whole genome shotgun sequence
NZ_AAMT01000032
24.3 KB
24 CDS

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whole genome shotgun sequence
NZ_AAMT01000033
24.3 KB
25 CDS

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whole genome shotgun sequence
NZ_AAMT01000034
24.0 KB
27 CDS

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whole genome shotgun sequence
NZ_AAMT01000035
18.4 KB
22 CDS

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whole genome shotgun sequence
NZ_AAMT01000036
15.5 KB
17 CDS

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whole genome shotgun sequence
NZ_AAMT01000037
12.6 KB
15 CDS

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whole genome shotgun sequence
NZ_AAMT01000038
12.2 KB
11 CDS

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whole genome shotgun sequence
NZ_AAMT01000039
9.9 KB
15 CDS

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whole genome shotgun sequence
NZ_AAMT01000040
6.1 KB
5 CDS

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whole genome shotgun sequence
NZ_AAMT01000041
5.0 KB
6 CDS

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whole genome shotgun sequence
NZ_AAMT01000042
3.0 KB
5 CDS

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whole genome shotgun sequence
NZ_AAMT01000043
2.9 KB
4 CDS

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whole genome shotgun sequence
NZ_AAMT01000044
2.4 KB
5 CDS

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whole genome shotgun sequence
NZ_AAMT01000045
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_AAMT01000046
1001 bytes
2 CDS

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Taxonomy

External Links

Rhodobacterales bacterium HTCC2654

Search Genome

Sequences

PubMed Search for Rhodobacterales bacterium HTCC2654

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