Rhodococcus erythropolis SK121

J. Craig Venter Institute

GC Content: 62.4%, Released Date: May 1, 2009 #18342

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACNO01000001
934.7 KB
977 CDS

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whole genome shotgun sequence
NZ_ACNO01000002
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000003
38.2 KB
28 CDS

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whole genome shotgun sequence
NZ_ACNO01000004
339.5 KB
366 CDS

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whole genome shotgun sequence
NZ_ACNO01000005
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000006
25.3 KB
27 CDS

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whole genome shotgun sequence
NZ_ACNO01000007
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000008
5.9 KB
8 CDS

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whole genome shotgun sequence
NZ_ACNO01000009
3.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ACNO01000010
117.7 KB
123 CDS

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whole genome shotgun sequence
NZ_ACNO01000011
31.7 KB
35 CDS

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whole genome shotgun sequence
NZ_ACNO01000012
19.3 KB
17 CDS

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whole genome shotgun sequence
NZ_ACNO01000013
13.1 KB
20 CDS

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whole genome shotgun sequence
NZ_ACNO01000014
134.1 KB
134 CDS

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whole genome shotgun sequence
NZ_ACNO01000015
5.0 KB
9 CDS

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whole genome shotgun sequence
NZ_ACNO01000016
12.4 KB
11 CDS

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whole genome shotgun sequence
NZ_ACNO01000017
10.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ACNO01000018
500 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACNO01000019
30.2 KB
31 CDS

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whole genome shotgun sequence
NZ_ACNO01000020
84.3 KB
95 CDS

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whole genome shotgun sequence
NZ_ACNO01000021
3.8 KB
6 CDS

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whole genome shotgun sequence
NZ_ACNO01000022
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNO01000023
892 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000024
503 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000025
82.0 KB
91 CDS

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whole genome shotgun sequence
NZ_ACNO01000026
142.0 KB
149 CDS

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whole genome shotgun sequence
NZ_ACNO01000027
14.5 KB
24 CDS

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whole genome shotgun sequence
NZ_ACNO01000028
8.7 KB
10 CDS

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whole genome shotgun sequence
NZ_ACNO01000029
245.7 KB
247 CDS

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whole genome shotgun sequence
NZ_ACNO01000030
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNO01000031
767 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000032
177.9 KB
175 CDS

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whole genome shotgun sequence
NZ_ACNO01000033
10.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ACNO01000034
89.2 KB
83 CDS

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whole genome shotgun sequence
NZ_ACNO01000035
942 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000036
73.0 KB
46 CDS

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whole genome shotgun sequence
NZ_ACNO01000037
13.9 KB
13 CDS

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whole genome shotgun sequence
NZ_ACNO01000038
20.5 KB
18 CDS

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whole genome shotgun sequence
NZ_ACNO01000039
123.9 KB
129 CDS

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whole genome shotgun sequence
NZ_ACNO01000040
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNO01000041
61.7 KB
62 CDS

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whole genome shotgun sequence
NZ_ACNO01000042
17.1 KB
18 CDS

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whole genome shotgun sequence
NZ_ACNO01000043
149.2 KB
152 CDS

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whole genome shotgun sequence
NZ_ACNO01000044
635 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000045
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000046
434.2 KB
442 CDS

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whole genome shotgun sequence
NZ_ACNO01000047
23.1 KB
24 CDS

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whole genome shotgun sequence
NZ_ACNO01000048
32.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ACNO01000049
964 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000050
39.0 KB
43 CDS

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whole genome shotgun sequence
NZ_ACNO01000051
2.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNO01000052
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNO01000053
35.9 KB
51 CDS

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whole genome shotgun sequence
NZ_ACNO01000054
2.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ACNO01000055
10.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ACNO01000056
6.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ACNO01000057
33.0 KB
32 CDS

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whole genome shotgun sequence
NZ_ACNO01000058
70.4 KB
75 CDS

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whole genome shotgun sequence
NZ_ACNO01000059
87.3 KB
85 CDS

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whole genome shotgun sequence
NZ_ACNO01000060
116.4 KB
130 CDS

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whole genome shotgun sequence
NZ_ACNO01000061
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000062
501 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACNO01000063
33.9 KB
42 CDS

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whole genome shotgun sequence
NZ_ACNO01000064
208.1 KB
199 CDS

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whole genome shotgun sequence
NZ_ACNO01000065
2.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ACNO01000066
131.6 KB
116 CDS

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whole genome shotgun sequence
NZ_ACNO01000067
10.8 KB
12 CDS

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whole genome shotgun sequence
NZ_ACNO01000068
643 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000069
67.9 KB
71 CDS

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whole genome shotgun sequence
NZ_ACNO01000070
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000071
69.4 KB
89 CDS

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whole genome shotgun sequence
NZ_ACNO01000072
142.2 KB
153 CDS

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whole genome shotgun sequence
NZ_ACNO01000073
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000074
6.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000075
138.3 KB
136 CDS

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whole genome shotgun sequence
NZ_ACNO01000076
78.6 KB
91 CDS

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whole genome shotgun sequence
NZ_ACNO01000077
4.7 KB
6 CDS

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whole genome shotgun sequence
NZ_ACNO01000078
79.4 KB
79 CDS

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whole genome shotgun sequence
NZ_ACNO01000079
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNO01000080
2.5 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNO01000081
946 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACNO01000082
292.1 KB
260 CDS

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whole genome shotgun sequence
NZ_ACNO01000083
25.8 KB
30 CDS

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whole genome shotgun sequence
NZ_ACNO01000084
500 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000085
31.3 KB
33 CDS

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whole genome shotgun sequence
NZ_ACNO01000086
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNO01000087
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000088
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNO01000089
63.3 KB
54 CDS

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whole genome shotgun sequence
NZ_ACNO01000090
5.4 KB
6 CDS

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whole genome shotgun sequence
NZ_ACNO01000091
739 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000092
615 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000093
12.9 KB
5 CDS

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whole genome shotgun sequence
NZ_ACNO01000094
19.9 KB
22 CDS

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whole genome shotgun sequence
NZ_ACNO01000095
79.3 KB
86 CDS

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whole genome shotgun sequence
NZ_ACNO01000096
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNO01000097
11.0 KB
15 CDS

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whole genome shotgun sequence
NZ_ACNO01000098
94.5 KB
86 CDS

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whole genome shotgun sequence
NZ_ACNO01000099
12.4 KB
16 CDS

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whole genome shotgun sequence
NZ_ACNO01000100
13.4 KB
14 CDS

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whole genome shotgun sequence
NZ_ACNO01000101
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000102
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000103
605 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000104
542.1 KB
543 CDS

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whole genome shotgun sequence
NZ_ACNO01000105
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000106
528 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000107
11.6 KB
16 CDS

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whole genome shotgun sequence
NZ_ACNO01000108
1.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ACNO01000109
112.5 KB
106 CDS

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whole genome shotgun sequence
NZ_ACNO01000110
7.9 KB
13 CDS

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whole genome shotgun sequence
NZ_ACNO01000111
36.2 KB
35 CDS

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whole genome shotgun sequence
NZ_ACNO01000112
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACNO01000113
14.3 KB
15 CDS

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whole genome shotgun sequence
NZ_ACNO01000114
66.9 KB
63 CDS

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whole genome shotgun sequence
NZ_ACNO01000115
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000116
62.0 KB
65 CDS

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whole genome shotgun sequence
NZ_ACNO01000117
2.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ACNO01000118
53.6 KB
51 CDS

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whole genome shotgun sequence
NZ_ACNO01000119
523 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000120
1.7 KB
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000121
95.5 KB
102 CDS

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whole genome shotgun sequence
NZ_ACNO01000122
515 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACNO01000123
840 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACNO01000124
3.5 KB
6 CDS

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Taxonomy

External Links

Rhodococcus erythropolis SK121

Search Genome

Sequences

PubMed Search for Rhodococcus erythropolis SK121

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