Rhodococcus opacus B4

National Institute of Technology and Evaluation

Genome Size: 8.8172 megabases, GC Content: 67.6%, Released Date: April 1, 2009 #20003

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_012522
7.5 MB
7246 CDS

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plasmid pKNR
NC_012523
108.6 KB
102 CDS

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plasmid pKNR01
NC_006969
4.3 KB
6 CDS

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plasmid pKNR02
NC_006970
2.7 KB
2 CDS

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plasmid pROB01
NC_012520
545.1 KB
593 CDS

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plasmid pROB02
NC_012521
239.3 KB
248 CDS

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Taxonomy

External Links

Rhodococcus opacus B4

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Sequences

PubMed Search for Rhodococcus opacus B4

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