Rhodopirellula baltica SH 1

Max Planck Institute

Genome Size: 7.1 megabases, GC Content: 55.4%, Released Date: July 2, 2003 #17369

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_005027
6.8 MB
7325 CDS

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References

Complete genome sequence of the marine planctomycete Pirellula sp. strain 1
Gloeckner,F.O., Kube,M., Bauer,M., Teeling,H., Lombardot,T., Ludwig,W., Gade,D., Beck,A., Borzym,K., Heitmann,K., Rabus,R., Schlesner,H., Amann,R. and Reinhardt,R. Proc. Natl. Acad. Sci. U.S.A. 100 (14), 8298-8303 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Rhodopirellula baltica SH 1

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Sequences

References

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