Rickettsia africae ESF-5

CNRS , Genoscope , Laboratoire Information Genomique et Structurale, France, Marseille

Genome Size: 1.31 megabases, GC Content: 32.4%, Released Date: Nov. 30, 2006 #17379

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_012633
1.2 MB
1030 CDS

Table view
Circular View
Artemis Viewer

plasmid pRAF
NC_012634
12.1 KB
11 CDS

Table view
Circular View
Artemis Viewer

References

Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction
Fournier,P.E., El Karkouri,K., Leroy,Q., Robert,C., Giumelli,B., Renesto,P., Socolovschi,C., Parola,P., Audic,S. and Raoult,D. BMC Genomics 10 (1), 166 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Rickettsia africae ESF-5

Search Genome

Sequences

References

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