Rickettsia conorii str. Malish 7

CNRS

Genome Size: 1.3 megabases, GC Content: 32.4%, Released Date: Oct. 13, 2000 #17384

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_003103
1.2 MB
1374 CDS

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References

Mechanisms of evolution in Rickettsia conorii and R. prowazekii
Ogata,H., Audic,S., Renesto-Audiffren,P., Fournier,P.-E., Barbe,V., Samson,D., Roux,V., Cossart,P., Weissenbach,J., Claverie,J.-M. and Raoult,D. Science 293 (5537), 2093-2098 (2001)
PubMed, PubGet, HubMed
Selfish DNA in protein-coding genes of Rickettsia
Ogata,H., Audic,S., Barbe,V., Artiguenave,F., Fournier,P.E., Raoult,D. and Claverie,J.M. Science 290 (5490), 347-350 (2000)
PubMed, PubGet, HubMed

Taxonomy

External Links

Rickettsia conorii str. Malish 7

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Sequences

References

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