Rickettsia felis URRWXCal2

CNRS

Genome Size: 1.59 megabases, GC Content: 32.5%, Released Date: June 7, 2005 #17385

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_007109
1.4 MB
1400 CDS

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plasmid pRF
NC_007110
61.4 KB
68 CDS

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plasmid pRFdelta
NC_007111
38.3 KB
44 CDS

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References

The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite
Ogata,H., Renesto,P., Audic,S., Robert,C., Blanc,G., Fournier,P.E., Parinello,H., Claverie,J.M. and Raoult,D. PLoS Biol. 3 (8), E248 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Rickettsia felis URRWXCal2

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Sequences

References

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