Rickettsia prowazekii str. Madrid E

Uppsala Univ.

Genome Size: 1.1 megabases, GC Content: 29.0%, Released Date: Nov. 21, 1998 #17388

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_000963
1.1 MB
835 CDS

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References

The genome sequence of Rickettsia prowazekii and the origin of mitochondria
Andersson,S.G., Zomorodipour,A., Andersson,J.O., Sicheritz-Ponten,T., Alsmark,U.C., Podowski,R.M., Naslund,A.K., Eriksson,A.S., Winkler,H.H. and Kurland,C.G. Nature 396 (6707), 133-140 (1998)
PubMed, PubGet, HubMed

Taxonomy

External Links

Rickettsia prowazekii str. Madrid E

Search Genome

Sequences

References

Related Genomes