Rickettsia rickettsii str. Iowa

Rocky Mountain Laboratories , Integrated Genomics, Inc.

Genome Size: 1.3 megabases, GC Content: 32.4%, Released Date: Jan. 17, 2008 #17390

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_010263
1.2 MB
1383 CDS

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References

Genomic comparison of virulent Rickettsia rickettsii Sheila Smith and avirulent Rickettsia rickettsii Iowa
Ellison,D.W., Clark,T.R., Sturdevant,D.E., Virtaneva,K., Porcella,S.F. and Hackstadt,T. Infect. Immun. 76 (2), 542-550 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Rickettsia rickettsii str. Iowa

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Sequences

References

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