Riemerella anatipestifer RA-YM

Huazhong Agricultural University

#20779

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

scaffold1, whole genome shotgun sequence
AENH01000001
362.7 KB
354 CDS

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scaffold10, whole genome shotgun sequence
AENH01000002
34.3 KB
29 CDS

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scaffold11, whole genome shotgun sequence
AENH01000003
207.1 KB
206 CDS

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scaffold12, whole genome shotgun sequence
AENH01000004
1.7 KB
2 CDS

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scaffold13, whole genome shotgun sequence
AENH01000005
46.7 KB
42 CDS

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scaffold14, whole genome shotgun sequence
AENH01000006
6.1 KB
6 CDS

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scaffold15, whole genome shotgun sequence
AENH01000007
45.7 KB
42 CDS

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scaffold16, whole genome shotgun sequence
AENH01000008
4.6 KB
6 CDS

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scaffold17, whole genome shotgun sequence
AENH01000009
162.6 KB
198 CDS

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scaffold18, whole genome shotgun sequence
AENH01000010
45.9 KB
34 CDS

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scaffold19, whole genome shotgun sequence
AENH01000011
886 bytes
2 CDS

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scaffold2, whole genome shotgun sequence
AENH01000012
181.1 KB
165 CDS

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scaffold20, whole genome shotgun sequence
AENH01000013
1016 bytes
1 CDS

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scaffold21, whole genome shotgun sequence
AENH01000014
981 bytes
1 CDS

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scaffold22, whole genome shotgun sequence
AENH01000015
3.6 KB
5 CDS

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scaffold23, whole genome shotgun sequence
AENH01000016
1.0 KB
1 CDS

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scaffold24, whole genome shotgun sequence
AENH01000017
1.0 KB
1 CDS

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scaffold25, whole genome shotgun sequence
AENH01000018
1.5 KB
2 CDS

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scaffold26, whole genome shotgun sequence
AENH01000019
790 bytes
2 CDS

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scaffold27, whole genome shotgun sequence
AENH01000020
41.2 KB
31 CDS

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scaffold28, whole genome shotgun sequence
AENH01000021
3.2 KB
3 CDS

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scaffold29, whole genome shotgun sequence
AENH01000022
48.2 KB
45 CDS

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scaffold3, whole genome shotgun sequence
AENH01000023
173.6 KB
166 CDS

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scaffold4, whole genome shotgun sequence
AENH01000024
106.3 KB
110 CDS

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scaffold5, whole genome shotgun sequence
AENH01000025
57.8 KB
46 CDS

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scaffold6, whole genome shotgun sequence
AENH01000026
214.6 KB
192 CDS

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scaffold7, whole genome shotgun sequence
AENH01000027
218.0 KB
206 CDS

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scaffold8, whole genome shotgun sequence
AENH01000028
98.7 KB
94 CDS

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scaffold9, whole genome shotgun sequence
AENH01000029
9.4 KB
14 CDS

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Taxonomy

External Links

Riemerella anatipestifer RA-YM

Search Genome

Sequences

PubMed Search for Riemerella anatipestifer RA-YM

Related Genomes