Robiginitalea biformata HTCC2501

J. Craig Venter Institute

Genome Size: 3.5 megabases, GC Content: 55.3%, Released Date: Feb. 24, 2006 #17392

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_013222
3.4 MB
3209 CDS

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References

Complete genome sequence of Robiginitalea biformata HTCC2501
Oh,H.M., Giovannoni,S.J., Lee,K., Ferriera,S., Johnson,J. and Cho,J.C. J. Bacteriol. 191 (22), 7144-7145 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Robiginitalea biformata HTCC2501

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Sequences

References

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