Roseobacter litoralis Och 149

J. Craig Venter Institute

GC Content: 57.3%, Released Date: Nov. 30, 2007 #18347

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABIG01000001
646.0 KB
661 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000002
470.0 KB
493 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000003
436.4 KB
443 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000004
368.0 KB
380 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000005
358.3 KB
365 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000006
267.2 KB
310 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000007
262.3 KB
263 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000008
239.9 KB
263 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000009
236.9 KB
250 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000010
167.4 KB
136 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000011
152.6 KB
185 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000012
139.1 KB
137 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000013
103.3 KB
105 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000014
92.3 KB
98 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000015
92.2 KB
96 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000016
91.8 KB
95 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000017
81.2 KB
95 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000018
79.5 KB
78 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000019
76.8 KB
87 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000020
67.7 KB
61 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000021
62.7 KB
56 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000022
24.8 KB
34 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000023
23.8 KB
22 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000024
14.2 KB
16 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000025
12.4 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000026
1.4 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABIG01000027
1.0 KB
2 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Roseobacter litoralis Och 149

Search Genome

Sequences

PubMed Search for Roseobacter litoralis Och 149

Related Genomes