Roseobacter sp. SK209-2-6

J. Craig Venter Institute

GC Content: 57.0%, Released Date: March 7, 2007 #18351

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAYC01000001
634.5 KB
667 CDS

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whole genome shotgun sequence
NZ_AAYC01000002
517.8 KB
519 CDS

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whole genome shotgun sequence
NZ_AAYC01000003
342.7 KB
367 CDS

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whole genome shotgun sequence
NZ_AAYC01000004
314.1 KB
314 CDS

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whole genome shotgun sequence
NZ_AAYC01000005
278.2 KB
294 CDS

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whole genome shotgun sequence
NZ_AAYC01000006
259.9 KB
267 CDS

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whole genome shotgun sequence
NZ_AAYC01000007
241.3 KB
248 CDS

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whole genome shotgun sequence
NZ_AAYC01000008
207.4 KB
204 CDS

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whole genome shotgun sequence
NZ_AAYC01000009
203.0 KB
208 CDS

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whole genome shotgun sequence
NZ_AAYC01000010
199.6 KB
203 CDS

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whole genome shotgun sequence
NZ_AAYC01000011
171.1 KB
159 CDS

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whole genome shotgun sequence
NZ_AAYC01000012
155.6 KB
158 CDS

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whole genome shotgun sequence
NZ_AAYC01000013
155.4 KB
175 CDS

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whole genome shotgun sequence
NZ_AAYC01000014
107.9 KB
109 CDS

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whole genome shotgun sequence
NZ_AAYC01000015
100.5 KB
108 CDS

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whole genome shotgun sequence
NZ_AAYC01000016
97.3 KB
86 CDS

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whole genome shotgun sequence
NZ_AAYC01000017
81.8 KB
86 CDS

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whole genome shotgun sequence
NZ_AAYC01000018
79.0 KB
74 CDS

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whole genome shotgun sequence
NZ_AAYC01000019
57.5 KB
51 CDS

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whole genome shotgun sequence
NZ_AAYC01000020
57.4 KB
61 CDS

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whole genome shotgun sequence
NZ_AAYC01000021
55.4 KB
55 CDS

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whole genome shotgun sequence
NZ_AAYC01000022
26.7 KB
30 CDS

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whole genome shotgun sequence
NZ_AAYC01000023
25.6 KB
30 CDS

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whole genome shotgun sequence
NZ_AAYC01000024
23.1 KB
19 CDS

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whole genome shotgun sequence
NZ_AAYC01000025
19.8 KB
18 CDS

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whole genome shotgun sequence
NZ_AAYC01000026
15.3 KB
10 CDS

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whole genome shotgun sequence
NZ_AAYC01000027
13.6 KB
7 CDS

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whole genome shotgun sequence
NZ_AAYC01000028
5.9 KB
7 CDS

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whole genome shotgun sequence
NZ_AAYC01000029
1.8 KB
3 CDS

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Taxonomy

External Links

Roseobacter sp. SK209-2-6

Search Genome

Sequences

PubMed Search for Roseobacter sp. SK209-2-6

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