Roseovarius sp. 217

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 60.8%, Released Date: Jan. 23, 2006 #18353

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAMV01000001
1023.9 KB
1032 CDS

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whole genome shotgun sequence
NZ_AAMV01000002
574.0 KB
574 CDS

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whole genome shotgun sequence
NZ_AAMV01000003
366.5 KB
336 CDS

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whole genome shotgun sequence
NZ_AAMV01000004
241.9 KB
252 CDS

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whole genome shotgun sequence
NZ_AAMV01000005
225.4 KB
242 CDS

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whole genome shotgun sequence
NZ_AAMV01000006
211.2 KB
205 CDS

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whole genome shotgun sequence
NZ_AAMV01000007
209.6 KB
241 CDS

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whole genome shotgun sequence
NZ_AAMV01000008
202.7 KB
192 CDS

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whole genome shotgun sequence
NZ_AAMV01000009
202.3 KB
208 CDS

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whole genome shotgun sequence
NZ_AAMV01000010
194.0 KB
214 CDS

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whole genome shotgun sequence
NZ_AAMV01000011
180.7 KB
175 CDS

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whole genome shotgun sequence
NZ_AAMV01000012
174.7 KB
184 CDS

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whole genome shotgun sequence
NZ_AAMV01000013
167.9 KB
168 CDS

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whole genome shotgun sequence
NZ_AAMV01000014
93.2 KB
95 CDS

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whole genome shotgun sequence
NZ_AAMV01000015
81.8 KB
85 CDS

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whole genome shotgun sequence
NZ_AAMV01000016
78.7 KB
83 CDS

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whole genome shotgun sequence
NZ_AAMV01000017
56.9 KB
70 CDS

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whole genome shotgun sequence
NZ_AAMV01000018
52.2 KB
55 CDS

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whole genome shotgun sequence
NZ_AAMV01000019
45.1 KB
48 CDS

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whole genome shotgun sequence
NZ_AAMV01000020
35.8 KB
41 CDS

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whole genome shotgun sequence
NZ_AAMV01000021
34.5 KB
39 CDS

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whole genome shotgun sequence
NZ_AAMV01000022
29.9 KB
32 CDS

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whole genome shotgun sequence
NZ_AAMV01000023
29.7 KB
42 CDS

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whole genome shotgun sequence
NZ_AAMV01000024
29.2 KB
32 CDS

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whole genome shotgun sequence
NZ_AAMV01000025
27.9 KB
34 CDS

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whole genome shotgun sequence
NZ_AAMV01000026
13.6 KB
12 CDS

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whole genome shotgun sequence
NZ_AAMV01000027
13.4 KB
16 CDS

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whole genome shotgun sequence
NZ_AAMV01000028
13.2 KB
12 CDS

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whole genome shotgun sequence
NZ_AAMV01000029
11.2 KB
9 CDS

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whole genome shotgun sequence
NZ_AAMV01000030
9.4 KB
13 CDS

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whole genome shotgun sequence
NZ_AAMV01000031
7.3 KB
10 CDS

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whole genome shotgun sequence
NZ_AAMV01000032
5.4 KB
9 CDS

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whole genome shotgun sequence
NZ_AAMV01000033
2.2 KB
4 CDS

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whole genome shotgun sequence
NZ_AAMV01000034
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AAMV01000035
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_AAMV01000036
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AAMV01000037
1.0 KB
2 CDS

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Taxonomy

External Links

Roseovarius sp. 217

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Sequences

PubMed Search for Roseovarius sp. 217

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