Roseovarius sp. HTCC2601

J. Craig Venter Institute

Genome Size: 5.0 megabases, GC Content: 66.4%, Released Date: Sept. 15, 2006 #18354

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AATQ01000001
338.0 KB
545 CDS

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whole genome shotgun sequence
NZ_AATQ01000002
237.3 KB
231 CDS

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whole genome shotgun sequence
NZ_AATQ01000003
191.5 KB
164 CDS

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whole genome shotgun sequence
NZ_AATQ01000004
174.6 KB
184 CDS

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whole genome shotgun sequence
NZ_AATQ01000005
168.4 KB
150 CDS

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whole genome shotgun sequence
NZ_AATQ01000006
150.9 KB
147 CDS

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whole genome shotgun sequence
NZ_AATQ01000007
139.6 KB
136 CDS

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whole genome shotgun sequence
NZ_AATQ01000008
136.5 KB
130 CDS

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whole genome shotgun sequence
NZ_AATQ01000009
132.3 KB
122 CDS

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whole genome shotgun sequence
NZ_AATQ01000010
129.4 KB
120 CDS

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whole genome shotgun sequence
NZ_AATQ01000011
127.9 KB
135 CDS

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whole genome shotgun sequence
NZ_AATQ01000012
123.6 KB
132 CDS

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whole genome shotgun sequence
NZ_AATQ01000013
122.7 KB
123 CDS

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whole genome shotgun sequence
NZ_AATQ01000014
105.9 KB
108 CDS

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whole genome shotgun sequence
NZ_AATQ01000015
104.9 KB
96 CDS

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whole genome shotgun sequence
NZ_AATQ01000016
102.7 KB
97 CDS

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whole genome shotgun sequence
NZ_AATQ01000017
93.0 KB
94 CDS

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whole genome shotgun sequence
NZ_AATQ01000018
88.5 KB
91 CDS

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whole genome shotgun sequence
NZ_AATQ01000019
84.2 KB
78 CDS

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whole genome shotgun sequence
NZ_AATQ01000020
84.0 KB
78 CDS

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whole genome shotgun sequence
NZ_AATQ01000021
82.9 KB
70 CDS

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whole genome shotgun sequence
NZ_AATQ01000022
82.3 KB
91 CDS

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whole genome shotgun sequence
NZ_AATQ01000023
77.5 KB
73 CDS

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whole genome shotgun sequence
NZ_AATQ01000024
74.7 KB
65 CDS

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whole genome shotgun sequence
NZ_AATQ01000025
73.9 KB
75 CDS

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whole genome shotgun sequence
NZ_AATQ01000026
66.2 KB
52 CDS

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whole genome shotgun sequence
NZ_AATQ01000027
65.5 KB
75 CDS

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whole genome shotgun sequence
NZ_AATQ01000028
64.2 KB
64 CDS

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whole genome shotgun sequence
NZ_AATQ01000029
63.5 KB
70 CDS

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whole genome shotgun sequence
NZ_AATQ01000030
60.6 KB
57 CDS

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whole genome shotgun sequence
NZ_AATQ01000031
59.3 KB
57 CDS

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whole genome shotgun sequence
NZ_AATQ01000032
58.0 KB
79 CDS

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whole genome shotgun sequence
NZ_AATQ01000033
54.9 KB
45 CDS

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whole genome shotgun sequence
NZ_AATQ01000034
54.4 KB
58 CDS

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whole genome shotgun sequence
NZ_AATQ01000035
54.1 KB
48 CDS

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whole genome shotgun sequence
NZ_AATQ01000036
52.2 KB
57 CDS

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whole genome shotgun sequence
NZ_AATQ01000037
48.3 KB
48 CDS

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whole genome shotgun sequence
NZ_AATQ01000038
47.7 KB
45 CDS

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whole genome shotgun sequence
NZ_AATQ01000039
47.3 KB
35 CDS

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whole genome shotgun sequence
NZ_AATQ01000040
46.5 KB
43 CDS

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whole genome shotgun sequence
NZ_AATQ01000041
44.1 KB
46 CDS

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whole genome shotgun sequence
NZ_AATQ01000042
41.1 KB
38 CDS

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whole genome shotgun sequence
NZ_AATQ01000043
39.9 KB
38 CDS

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whole genome shotgun sequence
NZ_AATQ01000044
39.5 KB
41 CDS

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whole genome shotgun sequence
NZ_AATQ01000045
39.0 KB
41 CDS

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whole genome shotgun sequence
NZ_AATQ01000046
38.7 KB
38 CDS

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whole genome shotgun sequence
NZ_AATQ01000047
38.3 KB
40 CDS

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whole genome shotgun sequence
NZ_AATQ01000048
36.7 KB
39 CDS

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whole genome shotgun sequence
NZ_AATQ01000049
35.6 KB
43 CDS

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whole genome shotgun sequence
NZ_AATQ01000050
33.8 KB
32 CDS

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whole genome shotgun sequence
NZ_AATQ01000051
33.6 KB
40 CDS

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whole genome shotgun sequence
NZ_AATQ01000052
33.4 KB
31 CDS

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whole genome shotgun sequence
NZ_AATQ01000053
33.2 KB
34 CDS

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whole genome shotgun sequence
NZ_AATQ01000054
33.0 KB
36 CDS

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whole genome shotgun sequence
NZ_AATQ01000055
32.3 KB
33 CDS

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whole genome shotgun sequence
NZ_AATQ01000056
31.1 KB
27 CDS

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whole genome shotgun sequence
NZ_AATQ01000057
30.0 KB
32 CDS

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whole genome shotgun sequence
NZ_AATQ01000058
29.8 KB
33 CDS

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whole genome shotgun sequence
NZ_AATQ01000059
26.4 KB
36 CDS

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whole genome shotgun sequence
NZ_AATQ01000060
25.9 KB
30 CDS

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whole genome shotgun sequence
NZ_AATQ01000061
25.6 KB
39 CDS

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whole genome shotgun sequence
NZ_AATQ01000062
25.6 KB
20 CDS

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whole genome shotgun sequence
NZ_AATQ01000063
25.6 KB
30 CDS

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whole genome shotgun sequence
NZ_AATQ01000064
24.7 KB
23 CDS

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whole genome shotgun sequence
NZ_AATQ01000065
24.7 KB
28 CDS

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whole genome shotgun sequence
NZ_AATQ01000066
23.1 KB
19 CDS

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whole genome shotgun sequence
NZ_AATQ01000067
22.5 KB
20 CDS

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whole genome shotgun sequence
NZ_AATQ01000068
22.0 KB
23 CDS

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whole genome shotgun sequence
NZ_AATQ01000069
21.2 KB
21 CDS

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whole genome shotgun sequence
NZ_AATQ01000070
20.9 KB
26 CDS

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whole genome shotgun sequence
NZ_AATQ01000071
19.8 KB
15 CDS

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whole genome shotgun sequence
NZ_AATQ01000072
19.3 KB
21 CDS

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whole genome shotgun sequence
NZ_AATQ01000073
18.5 KB
14 CDS

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whole genome shotgun sequence
NZ_AATQ01000074
16.1 KB
18 CDS

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whole genome shotgun sequence
NZ_AATQ01000075
13.3 KB
12 CDS

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whole genome shotgun sequence
NZ_AATQ01000076
13.2 KB
10 CDS

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whole genome shotgun sequence
NZ_AATQ01000077
12.9 KB
18 CDS

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whole genome shotgun sequence
NZ_AATQ01000078
12.6 KB
12 CDS

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whole genome shotgun sequence
NZ_AATQ01000079
12.1 KB
16 CDS

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whole genome shotgun sequence
NZ_AATQ01000080
11.6 KB
14 CDS

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whole genome shotgun sequence
NZ_AATQ01000081
11.5 KB
11 CDS

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whole genome shotgun sequence
NZ_AATQ01000082
11.5 KB
12 CDS

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whole genome shotgun sequence
NZ_AATQ01000083
11.3 KB
13 CDS

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whole genome shotgun sequence
NZ_AATQ01000084
10.5 KB
10 CDS

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whole genome shotgun sequence
NZ_AATQ01000085
10.0 KB
13 CDS

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whole genome shotgun sequence
NZ_AATQ01000086
10.0 KB
9 CDS

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whole genome shotgun sequence
NZ_AATQ01000087
9.7 KB
5 CDS

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whole genome shotgun sequence
NZ_AATQ01000088
9.4 KB
12 CDS

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whole genome shotgun sequence
NZ_AATQ01000089
9.3 KB
10 CDS

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whole genome shotgun sequence
NZ_AATQ01000090
7.1 KB
9 CDS

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whole genome shotgun sequence
NZ_AATQ01000091
7.1 KB
5 CDS

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whole genome shotgun sequence
NZ_AATQ01000092
6.4 KB
6 CDS

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whole genome shotgun sequence
NZ_AATQ01000093
6.1 KB
8 CDS

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whole genome shotgun sequence
NZ_AATQ01000094
5.0 KB
6 CDS

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whole genome shotgun sequence
NZ_AATQ01000095
5.0 KB
5 CDS

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whole genome shotgun sequence
NZ_AATQ01000096
4.0 KB
4 CDS

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whole genome shotgun sequence
NZ_AATQ01000097
3.1 KB
4 CDS

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whole genome shotgun sequence
NZ_AATQ01000098
2.6 KB
4 CDS

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whole genome shotgun sequence
NZ_AATQ01000099
2.6 KB
4 CDS

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whole genome shotgun sequence
NZ_AATQ01000100
2.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AATQ01000101
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AATQ01000102
828 bytes
1 CDS

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whole genome shotgun sequence
NZ_AATQ01000103
313 bytes
1 CDS

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Taxonomy

External Links

Roseovarius sp. HTCC2601

Search Genome

Sequences

PubMed Search for Roseovarius sp. HTCC2601

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