Rothia mucilaginosa ATCC 25296

J. Craig Venter Institute

Genome Size: 3.0 megabases, Released Date: Aug. 5, 2009 #18356

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACVO01000001
71.9 KB
50 CDS

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whole genome shotgun sequence
NZ_ACVO01000002
573 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVO01000003
98.4 KB
68 CDS

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whole genome shotgun sequence
NZ_ACVO01000004
135.1 KB
110 CDS

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whole genome shotgun sequence
NZ_ACVO01000005
187.3 KB
145 CDS

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whole genome shotgun sequence
NZ_ACVO01000006
14.3 KB
13 CDS

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whole genome shotgun sequence
NZ_ACVO01000007
75.1 KB
62 CDS

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whole genome shotgun sequence
NZ_ACVO01000008
715 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVO01000009
125.9 KB
109 CDS

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whole genome shotgun sequence
NZ_ACVO01000010
66.2 KB
53 CDS

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whole genome shotgun sequence
NZ_ACVO01000011
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVO01000012
8.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ACVO01000013
4.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ACVO01000014
81.5 KB
57 CDS

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whole genome shotgun sequence
NZ_ACVO01000015
561.9 KB
464 CDS

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whole genome shotgun sequence
NZ_ACVO01000016
166.8 KB
133 CDS

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whole genome shotgun sequence
NZ_ACVO01000017
258.9 KB
203 CDS

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whole genome shotgun sequence
NZ_ACVO01000018
6.5 KB
7 CDS

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whole genome shotgun sequence
NZ_ACVO01000019
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVO01000020
5.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVO01000021
25.7 KB
20 CDS

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whole genome shotgun sequence
NZ_ACVO01000022
501 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVO01000023
17.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ACVO01000024
119.3 KB
87 CDS

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whole genome shotgun sequence
NZ_ACVO01000025
168.4 KB
131 CDS

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Taxonomy

External Links

Rothia mucilaginosa ATCC 25296

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Sequences

PubMed Search for Rothia mucilaginosa ATCC 25296

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