Ruminococcus lactaris ATCC 29176

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 42.7%, Released Date: April 16, 2008 #18359

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABOU02000001
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABOU02000002
56.0 KB
67 CDS

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whole genome shotgun sequence
NZ_ABOU02000003
998 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABOU02000004
766 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABOU02000005
693 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABOU02000006
77.4 KB
74 CDS

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whole genome shotgun sequence
NZ_ABOU02000007
39.1 KB
43 CDS

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whole genome shotgun sequence
NZ_ABOU02000008
38.6 KB
33 CDS

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whole genome shotgun sequence
NZ_ABOU02000009
27.7 KB
36 CDS

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whole genome shotgun sequence
NZ_ABOU02000010
15.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ABOU02000011
879 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOU02000012
788 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABOU02000013
333 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABOU02000014
74.0 KB
75 CDS

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whole genome shotgun sequence
NZ_ABOU02000015
2.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ABOU02000016
7.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ABOU02000017
169.5 KB
173 CDS

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whole genome shotgun sequence
NZ_ABOU02000018
37.4 KB
35 CDS

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whole genome shotgun sequence
NZ_ABOU02000019
19.3 KB
10 CDS

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whole genome shotgun sequence
NZ_ABOU02000020
16.7 KB
21 CDS

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whole genome shotgun sequence
NZ_ABOU02000021
1.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABOU02000022
2.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABOU02000023
45.8 KB
49 CDS

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whole genome shotgun sequence
NZ_ABOU02000024
59.1 KB
69 CDS

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whole genome shotgun sequence
NZ_ABOU02000025
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABOU02000026
54.0 KB
62 CDS

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whole genome shotgun sequence
NZ_ABOU02000027
59.6 KB
58 CDS

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whole genome shotgun sequence
NZ_ABOU02000028
167.7 KB
196 CDS

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whole genome shotgun sequence
NZ_ABOU02000029
9.2 KB
13 CDS

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whole genome shotgun sequence
NZ_ABOU02000030
29.0 KB
26 CDS

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whole genome shotgun sequence
NZ_ABOU02000031
32.4 KB
30 CDS

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whole genome shotgun sequence
NZ_ABOU02000032
192.4 KB
191 CDS

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whole genome shotgun sequence
NZ_ABOU02000033
128.6 KB
123 CDS

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whole genome shotgun sequence
NZ_ABOU02000034
64.3 KB
59 CDS

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whole genome shotgun sequence
NZ_ABOU02000035
89.6 KB
100 CDS

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whole genome shotgun sequence
NZ_ABOU02000036
59.1 KB
54 CDS

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whole genome shotgun sequence
NZ_ABOU02000037
29.9 KB
30 CDS

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whole genome shotgun sequence
NZ_ABOU02000038
14.9 KB
14 CDS

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whole genome shotgun sequence
NZ_ABOU02000039
82.1 KB
78 CDS

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whole genome shotgun sequence
NZ_ABOU02000040
37.3 KB
40 CDS

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whole genome shotgun sequence
NZ_ABOU02000041
796 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABOU02000042
52.2 KB
32 CDS

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whole genome shotgun sequence
NZ_ABOU02000043
840 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOU02000044
14.9 KB
14 CDS

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whole genome shotgun sequence
NZ_ABOU02000045
44.2 KB
47 CDS

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whole genome shotgun sequence
NZ_ABOU02000046
53.9 KB
65 CDS

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whole genome shotgun sequence
NZ_ABOU02000047
71.8 KB
75 CDS

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whole genome shotgun sequence
NZ_ABOU02000048
188.4 KB
209 CDS

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whole genome shotgun sequence
NZ_ABOU02000049
53.7 KB
53 CDS

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whole genome shotgun sequence
NZ_ABOU02000050
165.1 KB
159 CDS

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whole genome shotgun sequence
NZ_ABOU02000051
52.2 KB
66 CDS

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whole genome shotgun sequence
NZ_ABOU02000052
41.4 KB
42 CDS

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whole genome shotgun sequence
NZ_ABOU02000053
20.7 KB
24 CDS

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whole genome shotgun sequence
NZ_ABOU02000054
1.8 KB
1 CDS

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whole genome shotgun sequence
NZ_ABOU02000055
118.7 KB
117 CDS

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whole genome shotgun sequence
NZ_ABOU02000056
4.7 KB
5 CDS

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whole genome shotgun sequence
NZ_ABOU02000057
946 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABOU02000058
8.5 KB
8 CDS

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whole genome shotgun sequence
NZ_ABOU02000059
8.1 KB
8 CDS

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whole genome shotgun sequence
NZ_ABOU02000060
5.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABOU02000061
4.9 KB
5 CDS

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whole genome shotgun sequence
NZ_ABOU02000062
4.4 KB
3 CDS

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Taxonomy

External Links

Ruminococcus lactaris ATCC 29176

Search Genome

Sequences

PubMed Search for Ruminococcus lactaris ATCC 29176

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