Salinibacter ruber DSM 13855

TIGR

Genome Size: 3.59 megabases, GC Content: 66.1%, Released Date: Dec. 20, 2005 #17403

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_007677
3.4 MB
2801 CDS

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plasmid pSR35
NC_007678
34.7 KB
32 CDS

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Circular View
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References

The genome of Salinibacter ruber: Convergence and gene exchange among hyperhalophilic bacteria and archaea
Mongodin,E.F., Nelson,K.E., Daugherty,S., Deboy,R.T., Wister,J., Khouri,H., Weidman,J., Walsh,D.A., Papke,R.T., Sanchez Perez,G., Sharma,A.K., Nesbo,C.L., Macleod,D., Bapteste,E., Doolittle,W.F., Charlebois,R.L., Legault,B. and Rodriguez-Valera,F. Proc. Natl. Acad. Sci. U.S.A. 102 (50), 18147-18152 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Salinibacter ruber DSM 13855

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Sequences

References

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