Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066

TIGR/JCVI

GC Content: 52.3%, Released Date: Aug. 31, 2007 #18365

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABFG01000001
758.2 KB
753 CDS

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whole genome shotgun sequence
NZ_ABFG01000002
445.1 KB
422 CDS

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whole genome shotgun sequence
NZ_ABFG01000003
438.2 KB
432 CDS

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whole genome shotgun sequence
NZ_ABFG01000004
402.3 KB
368 CDS

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whole genome shotgun sequence
NZ_ABFG01000005
362.0 KB
340 CDS

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whole genome shotgun sequence
NZ_ABFG01000006
357.5 KB
337 CDS

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whole genome shotgun sequence
NZ_ABFG01000007
324.0 KB
328 CDS

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whole genome shotgun sequence
NZ_ABFG01000008
283.9 KB
251 CDS

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whole genome shotgun sequence
NZ_ABFG01000009
232.2 KB
212 CDS

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whole genome shotgun sequence
NZ_ABFG01000010
198.8 KB
184 CDS

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whole genome shotgun sequence
NZ_ABFG01000011
140.7 KB
139 CDS

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whole genome shotgun sequence
NZ_ABFG01000012
114.8 KB
108 CDS

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whole genome shotgun sequence
NZ_ABFG01000013
109.7 KB
110 CDS

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whole genome shotgun sequence
NZ_ABFG01000014
90.4 KB
105 CDS

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whole genome shotgun sequence
NZ_ABFG01000015
62.6 KB
59 CDS

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whole genome shotgun sequence
NZ_ABFG01000016
58.3 KB
52 CDS

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whole genome shotgun sequence
NZ_ABFG01000017
52.6 KB
57 CDS

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whole genome shotgun sequence
NZ_ABFG01000018
39.6 KB
41 CDS

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whole genome shotgun sequence
NZ_ABFG01000019
32.6 KB
26 CDS

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whole genome shotgun sequence
NZ_ABFG01000020
32.6 KB
29 CDS

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whole genome shotgun sequence
NZ_ABFG01000021
24.2 KB
24 CDS

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whole genome shotgun sequence
NZ_ABFG01000022
23.3 KB
17 CDS

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whole genome shotgun sequence
NZ_ABFG01000023
20.0 KB
32 CDS

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whole genome shotgun sequence
NZ_ABFG01000024
13.2 KB
14 CDS

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whole genome shotgun sequence
NZ_ABFG01000025
12.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ABFG01000026
6.4 KB
8 CDS

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whole genome shotgun sequence
NZ_ABFG01000027
5.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000028
5.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFG01000029
4.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFG01000030
3.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABFG01000031
3.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFG01000032
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABFG01000033
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABFG01000034
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000035
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFG01000036
1.5 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000037
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000038
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABFG01000039
1.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000040
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000041
1.2 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000042
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000043
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000044
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000045
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000046
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000047
936 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000048
906 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000049
890 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABFG01000050
802 bytes
0 CDS

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Taxonomy

External Links

Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066

Search Genome

Sequences

PubMed Search for Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066

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