Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433

J. Craig Venter Institute

GC Content: 52.2%, Released Date: July 20, 2007 #18367

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABEH02000001
826.5 KB
765 CDS

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whole genome shotgun sequence
NZ_ABEH02000002
559.2 KB
556 CDS

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whole genome shotgun sequence
NZ_ABEH02000003
472.4 KB
462 CDS

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whole genome shotgun sequence
NZ_ABEH02000004
460.7 KB
425 CDS

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whole genome shotgun sequence
NZ_ABEH02000005
433.2 KB
407 CDS

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whole genome shotgun sequence
NZ_ABEH02000006
380.3 KB
348 CDS

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whole genome shotgun sequence
NZ_ABEH02000007
333.8 KB
323 CDS

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whole genome shotgun sequence
NZ_ABEH02000008
245.3 KB
222 CDS

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whole genome shotgun sequence
NZ_ABEH02000009
213.7 KB
200 CDS

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whole genome shotgun sequence
NZ_ABEH02000010
200.0 KB
217 CDS

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whole genome shotgun sequence
NZ_ABEH02000011
130.1 KB
150 CDS

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whole genome shotgun sequence
NZ_ABEH02000012
102.6 KB
94 CDS

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whole genome shotgun sequence
NZ_ABEH02000013
29.0 KB
23 CDS

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whole genome shotgun sequence
NZ_ABEH02000014
21.2 KB
17 CDS

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whole genome shotgun sequence
NZ_ABEH02000015
14.0 KB
12 CDS

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whole genome shotgun sequence
NZ_ABEH02000016
13.1 KB
12 CDS

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whole genome shotgun sequence
NZ_ABEH02000017
2.3 KB
0 CDS

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whole genome shotgun sequence
NZ_ABEH02000018
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABEH02000019
1.1 KB
0 CDS

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Taxonomy

External Links

Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433

Search Genome

Sequences

PubMed Search for Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433

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