Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594

Genomics Research Center of Harbin Medical

Genome Size: 4.86 megabases, GC Content: 52.2%, Released Date: March 3, 2009 #17417

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi
  Liu,W.Q., Feng,Y., Wang,Y., Zou,Q.H., Chen,F., Guo,J.T., Peng,Y.H., Jin,Y., Li,Y.G., Hu,S.N., Johnston,R.N., Liu,G.R. and Liu,S.L. PLoS ONE 4 (2), E4510 (2009)
  PubMed, PubGet, HubMed

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