Salmonella enterica subsp. enterica serovar Typhi str. Ty2

University of Wisconsin-Madison, USA

Genome Size: 4.8 megabases, GC Content: 52.1%, Released Date: March 20, 2003 #17420

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_004631
4.6 MB
4314 CDS

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References

Comparative Genomics of Salmonella enterica Serovar Typhi Strains Ty2 and CT18
Deng,W., Liou,S.R., Plunkett III,G., Mayhew,G.F., Rose,D.J., Burland,V., Kodoyianni,V., Schwartz,D.C. and Blattner,F.R. J. Bacteriol. 185 (7), 2330-2337 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Salmonella enterica subsp. enterica serovar Typhi str. Ty2

Search Genome

Sequences

References

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