Salmonella enterica subsp. enterica serovar Typhimurium

Wellcome Trust Sanger Institute

Genome Size: 4.9 megabases, GC Content: 52.2%, Released Date: Oct. 10, 2009 #20017

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype
  Kingsley,R.A., Msefula,C.L., Thomson,N.R., Kariuki,S., Holt,K.E., Gordon,M.A., Harris,D., Clarke,L., Whitehead,S., Sangal,V., Marsh,K., Achtman,M., Molyneux,M.E., Cormican,M., Parkhill,J., MacLennan,C.A., Heyderman,R.S. and Dougan,G. Genome Res. 19 (12), 2279-2287 (2009)
  PubMed, PubGet, HubMed

Related Genomes

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• Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
• Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
• Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
• Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
• Salmonella enterica subsp. enterica serovar Newport str. SL254
• Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
• Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
• Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
• Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
• Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
• Salmonella enterica subsp. enterica serovar Typhi str. CT18
• Salmonella enterica subsp. enterica serovar Typhi str. Ty2
• Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
• Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
• Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701
• Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066
• Salmonella enterica subsp. enterica serovar Heidelberg str. SL486
• Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
• Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191
• Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
• Salmonella enterica subsp. enterica serovar Newport str. SL317
• Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23
• Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29
• Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480
• Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191
• Salmonella enterica subsp. enterica serovar Typhi str. 404ty
• Salmonella enterica subsp. enterica serovar Typhi str. AG3
• Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
• Salmonella enterica subsp. enterica serovar Typhi str. E01-6750
• Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
• Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
• Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
• Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
• Salmonella enterica subsp. enterica serovar Typhi str. J185
• Salmonella enterica subsp. enterica serovar Typhi str. M223
• Salmonella enterica subsp. enterica serovar Virchow str. SL491
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• Salmonella enterica subsp. enterica serovar Typhimurium DT104 NCTC 13348
• Salmonella enterica subsp. enterica serovar Typhimurium SL1344 NCTC 13347
• Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344