Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S

University of Arizona

Genome Size: 4.99 megabases, Released Date: Nov. 13, 2009 #17669

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP001363
4.6 MB
5372 CDS

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plasmid
CP001362
91.6 KB
102 CDS

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Circular View
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References

Short-Term Signatures of Evolutionary Change in the Salmonella enterica Serovar Typhimurium 14028 Genome
Jarvik,T., Smillie,C., Groisman,E.A. and Ochman,H. J. Bacteriol. 192 (2), 560-567 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S

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Sequences

References

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