Salmonella enterica subsp. enterica serovar Virchow str. SL491

TIGR/JCVI

Genome Size: 0.01 megabases, GC Content: 52.1%, Released Date: Aug. 31, 2007 #18385

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABFH02000001
2.9 MB
2812 CDS

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whole genome shotgun sequence
NZ_ABFH02000002
1.8 MB
1839 CDS

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whole genome shotgun sequence
NZ_ABFH02000003
3.6 KB
3 CDS

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Taxonomy

External Links

Salmonella enterica subsp. enterica serovar Virchow str. SL491

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Sequences

PubMed Search for Salmonella enterica subsp. enterica serovar Virchow str. SL491

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