Shewanella piezotolerans WP3

James D. Watson Institute of Genome Sciences , Chinese Academy of Sciences , Hangzhou Genomics Institute , Key Laboratory of Marine Biogenetic Resources, State Oceanic administration/Third Institute of Oceanography, State Oceanic Administration , Zhejiang Univers

Genome Size: 5.4 megabases, GC Content: 43.3%, Released Date: Nov. 13, 2008 #17435

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3
  Wang,F., Wang,J., Jian,H., Zhang,B., Li,S., Wang,F., Zeng,X., Gao,L., Bartlett,D.H., Yu,J., Hu,S. and Xiao,X. PLoS ONE 3 (4), E1937 (2008)
  PubMed, PubGet, HubMed

Related Genomes

• Shewanella amazonensis SB2B
• Shewanella baltica OS155
• Shewanella baltica OS185
• Shewanella baltica OS195
• Shewanella baltica OS223
• Shewanella denitrificans OS217
• Shewanella frigidimarina NCIMB 400
• Shewanella halifaxensis HAW-EB4
• Shewanella loihica PV-4
• Shewanella oneidensis MR-1
• Shewanella pealeana ATCC 700345
• Shewanella putrefaciens CN-32
• Shewanella sediminis HAW-EB3
• Shewanella sp. ANA-3
• Shewanella sp. MR-4
• Shewanella sp. MR-7
• Shewanella sp. W3-18-1
• Shewanella woodyi ATCC 51908
• Shewanella benthica KT99
• Shewanella putrefaciens 200
• Shewanella baltica OS678
• Shewanella violacea DSS12
• Shewanella baltica BA175
• Shewanella baltica OS183