Shewanella putrefaciens 200

DOE Joint Genome Institute

GC Content: 44.4%, Released Date: Feb. 6, 2007 #18391

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAWY01000001
285.8 KB
254 CDS

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whole genome shotgun sequence
NZ_AAWY01000002
219.7 KB
180 CDS

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whole genome shotgun sequence
NZ_AAWY01000003
217.2 KB
228 CDS

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whole genome shotgun sequence
NZ_AAWY01000004
210.8 KB
172 CDS

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whole genome shotgun sequence
NZ_AAWY01000005
198.5 KB
176 CDS

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whole genome shotgun sequence
NZ_AAWY01000006
174.7 KB
171 CDS

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whole genome shotgun sequence
NZ_AAWY01000007
173.2 KB
158 CDS

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whole genome shotgun sequence
NZ_AAWY01000008
125.9 KB
117 CDS

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whole genome shotgun sequence
NZ_AAWY01000009
119.5 KB
98 CDS

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whole genome shotgun sequence
NZ_AAWY01000010
116.1 KB
119 CDS

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whole genome shotgun sequence
NZ_AAWY01000011
113.1 KB
92 CDS

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whole genome shotgun sequence
NZ_AAWY01000012
101.9 KB
91 CDS

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whole genome shotgun sequence
NZ_AAWY01000013
97.3 KB
76 CDS

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whole genome shotgun sequence
NZ_AAWY01000014
97.2 KB
83 CDS

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whole genome shotgun sequence
NZ_AAWY01000015
96.7 KB
90 CDS

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whole genome shotgun sequence
NZ_AAWY01000016
94.3 KB
77 CDS

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whole genome shotgun sequence
NZ_AAWY01000017
82.0 KB
64 CDS

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whole genome shotgun sequence
NZ_AAWY01000018
80.7 KB
69 CDS

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whole genome shotgun sequence
NZ_AAWY01000019
80.2 KB
64 CDS

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whole genome shotgun sequence
NZ_AAWY01000020
76.7 KB
64 CDS

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whole genome shotgun sequence
NZ_AAWY01000021
74.9 KB
65 CDS

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whole genome shotgun sequence
NZ_AAWY01000022
74.8 KB
67 CDS

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whole genome shotgun sequence
NZ_AAWY01000023
67.7 KB
59 CDS

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whole genome shotgun sequence
NZ_AAWY01000024
67.1 KB
61 CDS

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whole genome shotgun sequence
NZ_AAWY01000025
66.3 KB
66 CDS

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whole genome shotgun sequence
NZ_AAWY01000026
63.4 KB
65 CDS

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whole genome shotgun sequence
NZ_AAWY01000027
63.2 KB
54 CDS

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whole genome shotgun sequence
NZ_AAWY01000028
61.1 KB
52 CDS

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whole genome shotgun sequence
NZ_AAWY01000029
60.2 KB
52 CDS

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whole genome shotgun sequence
NZ_AAWY01000030
59.9 KB
60 CDS

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whole genome shotgun sequence
NZ_AAWY01000031
58.0 KB
50 CDS

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whole genome shotgun sequence
NZ_AAWY01000032
52.1 KB
46 CDS

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whole genome shotgun sequence
NZ_AAWY01000033
49.9 KB
46 CDS

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whole genome shotgun sequence
NZ_AAWY01000034
49.1 KB
51 CDS

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whole genome shotgun sequence
NZ_AAWY01000035
46.7 KB
42 CDS

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whole genome shotgun sequence
NZ_AAWY01000036
46.0 KB
42 CDS

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whole genome shotgun sequence
NZ_AAWY01000037
45.5 KB
31 CDS

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whole genome shotgun sequence
NZ_AAWY01000038
43.2 KB
36 CDS

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whole genome shotgun sequence
NZ_AAWY01000039
41.3 KB
39 CDS

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whole genome shotgun sequence
NZ_AAWY01000040
36.1 KB
33 CDS

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whole genome shotgun sequence
NZ_AAWY01000041
35.3 KB
32 CDS

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whole genome shotgun sequence
NZ_AAWY01000042
32.9 KB
34 CDS

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whole genome shotgun sequence
NZ_AAWY01000043
31.7 KB
42 CDS

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whole genome shotgun sequence
NZ_AAWY01000044
29.9 KB
28 CDS

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whole genome shotgun sequence
NZ_AAWY01000045
28.4 KB
23 CDS

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whole genome shotgun sequence
NZ_AAWY01000046
27.0 KB
24 CDS

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whole genome shotgun sequence
NZ_AAWY01000047
26.3 KB
26 CDS

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whole genome shotgun sequence
NZ_AAWY01000048
25.4 KB
26 CDS

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whole genome shotgun sequence
NZ_AAWY01000049
23.5 KB
20 CDS

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whole genome shotgun sequence
NZ_AAWY01000050
22.6 KB
22 CDS

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whole genome shotgun sequence
NZ_AAWY01000051
21.9 KB
19 CDS

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whole genome shotgun sequence
NZ_AAWY01000052
21.4 KB
16 CDS

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whole genome shotgun sequence
NZ_AAWY01000053
20.4 KB
21 CDS

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whole genome shotgun sequence
NZ_AAWY01000054
20.4 KB
20 CDS

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whole genome shotgun sequence
NZ_AAWY01000055
19.3 KB
13 CDS

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whole genome shotgun sequence
NZ_AAWY01000056
18.0 KB
12 CDS

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whole genome shotgun sequence
NZ_AAWY01000057
16.8 KB
12 CDS

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whole genome shotgun sequence
NZ_AAWY01000058
16.2 KB
14 CDS

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whole genome shotgun sequence
NZ_AAWY01000059
16.1 KB
17 CDS

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whole genome shotgun sequence
NZ_AAWY01000060
16.0 KB
16 CDS

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whole genome shotgun sequence
NZ_AAWY01000061
15.9 KB
17 CDS

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whole genome shotgun sequence
NZ_AAWY01000062
15.8 KB
13 CDS

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whole genome shotgun sequence
NZ_AAWY01000063
15.0 KB
16 CDS

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whole genome shotgun sequence
NZ_AAWY01000064
14.5 KB
13 CDS

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whole genome shotgun sequence
NZ_AAWY01000065
12.1 KB
13 CDS

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whole genome shotgun sequence
NZ_AAWY01000066
11.3 KB
12 CDS

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whole genome shotgun sequence
NZ_AAWY01000067
11.2 KB
12 CDS

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whole genome shotgun sequence
NZ_AAWY01000068
11.2 KB
11 CDS

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whole genome shotgun sequence
NZ_AAWY01000069
10.7 KB
6 CDS

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whole genome shotgun sequence
NZ_AAWY01000070
7.8 KB
6 CDS

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whole genome shotgun sequence
NZ_AAWY01000071
7.5 KB
9 CDS

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whole genome shotgun sequence
NZ_AAWY01000072
6.5 KB
7 CDS

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whole genome shotgun sequence
NZ_AAWY01000073
6.1 KB
3 CDS

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whole genome shotgun sequence
NZ_AAWY01000074
5.2 KB
5 CDS

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whole genome shotgun sequence
NZ_AAWY01000075
4.9 KB
5 CDS

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whole genome shotgun sequence
NZ_AAWY01000076
4.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AAWY01000077
4.2 KB
4 CDS

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whole genome shotgun sequence
NZ_AAWY01000078
4.2 KB
8 CDS

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whole genome shotgun sequence
NZ_AAWY01000079
4.2 KB
3 CDS

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whole genome shotgun sequence
NZ_AAWY01000080
4.1 KB
4 CDS

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whole genome shotgun sequence
NZ_AAWY01000081
4.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAWY01000082
4.1 KB
4 CDS

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whole genome shotgun sequence
NZ_AAWY01000083
4.0 KB
9 CDS

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whole genome shotgun sequence
NZ_AAWY01000084
4.0 KB
5 CDS

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whole genome shotgun sequence
NZ_AAWY01000085
3.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AAWY01000086
3.8 KB
4 CDS

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whole genome shotgun sequence
NZ_AAWY01000087
3.8 KB
5 CDS

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whole genome shotgun sequence
NZ_AAWY01000088
3.2 KB
7 CDS

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whole genome shotgun sequence
NZ_AAWY01000089
3.1 KB
3 CDS

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whole genome shotgun sequence
NZ_AAWY01000090
3.1 KB
3 CDS

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whole genome shotgun sequence
NZ_AAWY01000091
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_AAWY01000092
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AAWY01000093
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_AAWY01000094
2.0 KB
1 CDS

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Taxonomy

External Links

Shewanella putrefaciens 200

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Sequences

PubMed Search for Shewanella putrefaciens 200

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