Shewanella sp. MR-7

DOE Joint Genome Institute

Genome Size: 4.8 megabases, GC Content: 47.9%, Released Date: Sept. 1, 2006 #17440

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_008322
4.6 MB
4006 CDS

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Circular View
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plasmid1
NC_008320
6.3 KB
8 CDS

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Circular View
Artemis Viewer

Taxonomy

External Links

Shewanella sp. MR-7

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Sequences

PubMed Search for Shewanella sp. MR-7

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