Shigella boydii Sb227

Microbial Genome Center of ChMPH

Genome Size: 4.63 megabases, GC Content: 51.1%, Released Date: Nov. 9, 2005 #17444

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_007613
4.3 MB
4133 CDS

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plasmid pSB4_227
NC_007608
123.7 KB
148 CDS

Table view
Circular View
Artemis Viewer

References

Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery
Yang,F., Yang,J., Zhang,X., Chen,L., Jiang,Y., Yan,Y., Tang,X., Wang,J., Xiong,Z., Dong,J., Xue,Y., Zhu,Y., Xu,X., Sun,L., Chen,S., Nie,H., Peng,J., Xu,J., Wang,Y., Yuan,Z., Wen,Y., Yao,Z., Shen,Y., Qiang,B., Hou,Y., Yu,J. and Jin,Q. Nucleic Acids Res. 33 (19), 6445-6458 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Shigella boydii Sb227

Search Genome

Sequences

References

Related Genomes