Shigella flexneri 2a str. 2457T

University of Wisconsin-Madison, USA

Genome Size: 4.6 megabases, GC Content: 50.9%, Released Date: April 22, 2003 #17446

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_004741
4.4 MB
4060 CDS

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References

Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T
Wei,J., Goldberg,M.B., Burland,V., Venkatesan,M.M., Deng,W., Fournier,G., Mayhew,G.F., Plunkett,G. III, Rose,D.J., Darling,A., Mau,B., Perna,N.T., Payne,S.M., Runyen-Janecky,L.J., Zhou,S., Schwartz,D.C. and Blattner,F.R. Infect. Immun. 71 (5), 2775-2786 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Shigella flexneri 2a str. 2457T

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Sequences

References

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