Shigella flexneri 2a str. 2457T

Institute for Genome Sciences

#20656

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

gss2457T.assembly.10, whole genome shotgun sequence
ADUV01000001
385 bytes
1 CDS

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gss2457T.assembly.11, whole genome shotgun sequence
ADUV01000002
159.3 KB
166 CDS

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gss2457T.assembly.12, whole genome shotgun sequence
ADUV01000003
2.7 KB
4 CDS

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gss2457T.assembly.13, whole genome shotgun sequence
ADUV01000004
127.5 KB
135 CDS

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gss2457T.assembly.14, whole genome shotgun sequence
ADUV01000005
152.3 KB
157 CDS

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gss2457T.assembly.15, whole genome shotgun sequence
ADUV01000006
179.5 KB
201 CDS

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gss2457T.assembly.16, whole genome shotgun sequence
ADUV01000007
150.1 KB
172 CDS

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gss2457T.assembly.17, whole genome shotgun sequence
ADUV01000008
53.2 KB
69 CDS

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gss2457T.assembly.18, whole genome shotgun sequence
ADUV01000009
42.6 KB
49 CDS

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gss2457T.assembly.19, whole genome shotgun sequence
ADUV01000010
9.2 KB
17 CDS

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gss2457T.assembly.1, whole genome shotgun sequence
ADUV01000011
3.9 KB
7 CDS

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gss2457T.assembly.20, whole genome shotgun sequence
ADUV01000012
21.4 KB
27 CDS

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gss2457T.assembly.21, whole genome shotgun sequence
ADUV01000013
109.8 KB
142 CDS

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gss2457T.assembly.22, whole genome shotgun sequence
ADUV01000014
3.6 KB
7 CDS

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gss2457T.assembly.23, whole genome shotgun sequence
ADUV01000015
4.7 KB
11 CDS

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gss2457T.assembly.24, whole genome shotgun sequence
ADUV01000016
3.3 KB
3 CDS

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gss2457T.assembly.25, whole genome shotgun sequence
ADUV01000017
2.2 KB
6 CDS

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gss2457T.assembly.26, whole genome shotgun sequence
ADUV01000018
148.0 KB
146 CDS

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gss2457T.assembly.27, whole genome shotgun sequence
ADUV01000019
107.9 KB
151 CDS

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gss2457T.assembly.28, whole genome shotgun sequence
ADUV01000020
1.2 KB
4 CDS

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gss2457T.assembly.29, whole genome shotgun sequence
ADUV01000021
3.6 KB
8 CDS

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gss2457T.assembly.2, whole genome shotgun sequence
ADUV01000022
541 bytes
0 CDS

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gss2457T.assembly.30, whole genome shotgun sequence
ADUV01000023
1.1 KB
2 CDS

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gss2457T.assembly.31, whole genome shotgun sequence
ADUV01000024
33.7 KB
41 CDS

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gss2457T.assembly.32, whole genome shotgun sequence
ADUV01000025
12.2 KB
18 CDS

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gss2457T.assembly.33, whole genome shotgun sequence
ADUV01000026
131.7 KB
137 CDS

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gss2457T.assembly.34, whole genome shotgun sequence
ADUV01000027
3.4 KB
7 CDS

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gss2457T.assembly.35, whole genome shotgun sequence
ADUV01000028
745 bytes
2 CDS

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gss2457T.assembly.36, whole genome shotgun sequence
ADUV01000029
44.0 KB
58 CDS

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gss2457T.assembly.37, whole genome shotgun sequence
ADUV01000030
153.7 KB
164 CDS

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gss2457T.assembly.38, whole genome shotgun sequence
ADUV01000031
2.6 KB
5 CDS

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gss2457T.assembly.39, whole genome shotgun sequence
ADUV01000032
1.7 KB
4 CDS

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gss2457T.assembly.3, whole genome shotgun sequence
ADUV01000033
2.5 KB
1 CDS

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gss2457T.assembly.40, whole genome shotgun sequence
ADUV01000034
1.7 KB
2 CDS

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gss2457T.assembly.41, whole genome shotgun sequence
ADUV01000035
3.8 KB
7 CDS

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gss2457T.assembly.42, whole genome shotgun sequence
ADUV01000036
20.3 KB
24 CDS

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gss2457T.assembly.43, whole genome shotgun sequence
ADUV01000037
176.2 KB
184 CDS

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gss2457T.assembly.44, whole genome shotgun sequence
ADUV01000038
10.3 KB
21 CDS

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gss2457T.assembly.45, whole genome shotgun sequence
ADUV01000039
22.3 KB
34 CDS

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gss2457T.assembly.46, whole genome shotgun sequence
ADUV01000040
156.0 KB
179 CDS

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gss2457T.assembly.47, whole genome shotgun sequence
ADUV01000041
43.2 KB
53 CDS

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gss2457T.assembly.48, whole genome shotgun sequence
ADUV01000042
33.3 KB
38 CDS

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gss2457T.assembly.49, whole genome shotgun sequence
ADUV01000043
147.9 KB
151 CDS

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gss2457T.assembly.4, whole genome shotgun sequence
ADUV01000044
1.0 KB
4 CDS

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gss2457T.assembly.50, whole genome shotgun sequence
ADUV01000045
65.5 KB
66 CDS

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gss2457T.assembly.51, whole genome shotgun sequence
ADUV01000046
176.4 KB
173 CDS

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gss2457T.assembly.52, whole genome shotgun sequence
ADUV01000047
3.9 KB
5 CDS

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gss2457T.assembly.53, whole genome shotgun sequence
ADUV01000048
117.2 KB
129 CDS

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gss2457T.assembly.54, whole genome shotgun sequence
ADUV01000049
114.5 KB
129 CDS

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gss2457T.assembly.55, whole genome shotgun sequence
ADUV01000050
113.9 KB
133 CDS

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gss2457T.assembly.56, whole genome shotgun sequence
ADUV01000051
34.8 KB
37 CDS

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gss2457T.assembly.57, whole genome shotgun sequence
ADUV01000052
354.1 KB
383 CDS

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gss2457T.assembly.58, whole genome shotgun sequence
ADUV01000053
53.6 KB
48 CDS

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gss2457T.assembly.59, whole genome shotgun sequence
ADUV01000054
107.9 KB
118 CDS

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gss2457T.assembly.5, whole genome shotgun sequence
ADUV01000055
1.1 KB
3 CDS

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gss2457T.assembly.60, whole genome shotgun sequence
ADUV01000056
184.1 KB
190 CDS

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gss2457T.assembly.61, whole genome shotgun sequence
ADUV01000057
35.2 KB
43 CDS

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gss2457T.assembly.62, whole genome shotgun sequence
ADUV01000058
176.0 KB
191 CDS

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gss2457T.assembly.63, whole genome shotgun sequence
ADUV01000059
13.5 KB
18 CDS

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gss2457T.assembly.64, whole genome shotgun sequence
ADUV01000060
16.3 KB
20 CDS

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gss2457T.assembly.65, whole genome shotgun sequence
ADUV01000061
97.3 KB
96 CDS

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gss2457T.assembly.66, whole genome shotgun sequence
ADUV01000062
47.9 KB
58 CDS

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gss2457T.assembly.67, whole genome shotgun sequence
ADUV01000063
178.1 KB
196 CDS

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gss2457T.assembly.68, whole genome shotgun sequence
ADUV01000064
12.1 KB
16 CDS

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gss2457T.assembly.69, whole genome shotgun sequence
ADUV01000065
155.4 KB
173 CDS

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gss2457T.assembly.6, whole genome shotgun sequence
ADUV01000066
1.4 KB
3 CDS

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gss2457T.assembly.70, whole genome shotgun sequence
ADUV01000067
144.3 KB
146 CDS

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gss2457T.assembly.71, whole genome shotgun sequence
ADUV01000068
216.7 KB
239 CDS

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gss2457T.assembly.7, whole genome shotgun sequence
ADUV01000069
285 bytes
0 CDS

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gss2457T.assembly.8, whole genome shotgun sequence
ADUV01000070
467 bytes
1 CDS

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gss2457T.assembly.9, whole genome shotgun sequence
ADUV01000071
477 bytes
1 CDS

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Taxonomy

External Links

Shigella flexneri 2a str. 2457T

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Sequences

PubMed Search for Shigella flexneri 2a str. 2457T

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