Shigella sp. D9

GC Content: 50.7%, Released Date: Feb. 18, 2009 #18393

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACDL01000001
25.4 KB
27 CDS

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whole genome shotgun sequence
NZ_ACDL01000002
45.2 KB
42 CDS

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whole genome shotgun sequence
NZ_ACDL01000003
117.5 KB
112 CDS

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whole genome shotgun sequence
NZ_ACDL01000004
5.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACDL01000005
71.3 KB
64 CDS

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whole genome shotgun sequence
NZ_ACDL01000006
39.3 KB
42 CDS

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whole genome shotgun sequence
NZ_ACDL01000007
158.0 KB
140 CDS

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whole genome shotgun sequence
NZ_ACDL01000008
77.2 KB
65 CDS

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whole genome shotgun sequence
NZ_ACDL01000009
266.2 KB
259 CDS

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whole genome shotgun sequence
NZ_ACDL01000010
152.7 KB
154 CDS

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whole genome shotgun sequence
NZ_ACDL01000011
5.2 KB
7 CDS

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whole genome shotgun sequence
NZ_ACDL01000012
123.2 KB
112 CDS

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whole genome shotgun sequence
NZ_ACDL01000013
36.5 KB
30 CDS

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whole genome shotgun sequence
NZ_ACDL01000014
2.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ACDL01000015
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ACDL01000016
15.4 KB
17 CDS

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whole genome shotgun sequence
NZ_ACDL01000017
7.7 KB
8 CDS

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whole genome shotgun sequence
NZ_ACDL01000018
194.8 KB
185 CDS

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whole genome shotgun sequence
NZ_ACDL01000019
58.7 KB
62 CDS

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whole genome shotgun sequence
NZ_ACDL01000020
104.9 KB
116 CDS

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whole genome shotgun sequence
NZ_ACDL01000021
12.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ACDL01000022
93.4 KB
92 CDS

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whole genome shotgun sequence
NZ_ACDL01000023
30.1 KB
27 CDS

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whole genome shotgun sequence
NZ_ACDL01000024
149.4 KB
155 CDS

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whole genome shotgun sequence
NZ_ACDL01000025
82.9 KB
77 CDS

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whole genome shotgun sequence
NZ_ACDL01000026
10.7 KB
13 CDS

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whole genome shotgun sequence
NZ_ACDL01000027
102.6 KB
92 CDS

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whole genome shotgun sequence
NZ_ACDL01000028
16.6 KB
21 CDS

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whole genome shotgun sequence
NZ_ACDL01000029
3.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ACDL01000030
11.6 KB
12 CDS

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whole genome shotgun sequence
NZ_ACDL01000031
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACDL01000032
82.9 KB
82 CDS

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whole genome shotgun sequence
NZ_ACDL01000033
107.9 KB
93 CDS

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whole genome shotgun sequence
NZ_ACDL01000034
2.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACDL01000035
10.4 KB
14 CDS

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whole genome shotgun sequence
NZ_ACDL01000036
99.2 KB
98 CDS

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whole genome shotgun sequence
NZ_ACDL01000037
16.5 KB
15 CDS

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whole genome shotgun sequence
NZ_ACDL01000038
37.4 KB
39 CDS

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whole genome shotgun sequence
NZ_ACDL01000039
24.5 KB
27 CDS

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whole genome shotgun sequence
NZ_ACDL01000040
91.4 KB
106 CDS

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whole genome shotgun sequence
NZ_ACDL01000041
103.6 KB
97 CDS

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whole genome shotgun sequence
NZ_ACDL01000042
18.7 KB
20 CDS

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whole genome shotgun sequence
NZ_ACDL01000043
82.9 KB
84 CDS

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whole genome shotgun sequence
NZ_ACDL01000044
106.6 KB
106 CDS

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whole genome shotgun sequence
NZ_ACDL01000045
39.1 KB
40 CDS

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whole genome shotgun sequence
NZ_ACDL01000046
54.8 KB
46 CDS

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whole genome shotgun sequence
NZ_ACDL01000047
75.5 KB
63 CDS

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whole genome shotgun sequence
NZ_ACDL01000048
24.6 KB
23 CDS

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whole genome shotgun sequence
NZ_ACDL01000049
20.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ACDL01000050
24.4 KB
27 CDS

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whole genome shotgun sequence
NZ_ACDL01000051
262.2 KB
248 CDS

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whole genome shotgun sequence
NZ_ACDL01000052
3.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ACDL01000053
42.5 KB
39 CDS

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whole genome shotgun sequence
NZ_ACDL01000054
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ACDL01000055
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACDL01000056
2.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ACDL01000057
131.9 KB
118 CDS

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whole genome shotgun sequence
NZ_ACDL01000058
25.5 KB
46 CDS

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whole genome shotgun sequence
NZ_ACDL01000059
36.4 KB
41 CDS

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whole genome shotgun sequence
NZ_ACDL01000060
151.1 KB
139 CDS

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whole genome shotgun sequence
NZ_ACDL01000061
32.3 KB
23 CDS

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whole genome shotgun sequence
NZ_ACDL01000062
8.2 KB
8 CDS

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whole genome shotgun sequence
NZ_ACDL01000063
55.2 KB
50 CDS

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whole genome shotgun sequence
NZ_ACDL01000064
170.0 KB
164 CDS

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whole genome shotgun sequence
NZ_ACDL01000065
19.4 KB
20 CDS

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whole genome shotgun sequence
NZ_ACDL01000066
17.3 KB
16 CDS

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whole genome shotgun sequence
NZ_ACDL01000067
37.1 KB
37 CDS

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whole genome shotgun sequence
NZ_ACDL01000068
41.2 KB
39 CDS

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whole genome shotgun sequence
NZ_ACDL01000069
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ACDL01000070
188.3 KB
180 CDS

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whole genome shotgun sequence
NZ_ACDL01000071
2.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ACDL01000072
89.8 KB
87 CDS

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whole genome shotgun sequence
NZ_ACDL01000073
39.9 KB
42 CDS

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whole genome shotgun sequence
NZ_ACDL01000074
45.9 KB
47 CDS

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whole genome shotgun sequence
NZ_ACDL01000075
49.4 KB
44 CDS

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whole genome shotgun sequence
NZ_ACDL01000076
7.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ACDL01000077
42.6 KB
38 CDS

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whole genome shotgun sequence
NZ_ACDL01000078
30.1 KB
27 CDS

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whole genome shotgun sequence
NZ_ACDL01000079
4.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ACDL01000080
2.9 KB
0 CDS

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whole genome shotgun sequence
NZ_ACDL01000081
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ACDL01000082
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACDL01000083
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACDL01000084
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACDL01000085
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACDL01000086
1.0 KB
0 CDS

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whole genome shotgun sequence
NZ_ACDL01000087
860 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACDL01000088
773 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACDL01000089
727 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACDL01000090
605 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACDL01000091
553 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACDL01000092
520 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACDL01000093
520 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACDL01000094
520 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACDL01000095
519 bytes
2 CDS

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whole genome shotgun sequence
NZ_ACDL01000096
514 bytes
0 CDS

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whole genome shotgun sequence
NZ_ACDL01000097
508 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACDL01000098
503 bytes
0 CDS

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Taxonomy

External Links

Shigella sp. D9

Search Genome

Sequences

PubMed Search for Shigella sp. D9

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